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13_1_20cm_2_scaffold_5883

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_2_scaffold_5883_1
unknown

Not on your lists

comp(3..95)
DNA (93bp) protein (31aa)

This feature has no annotations

13_1_20cm_2_scaffold_5883_2
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(88..837)
DNA (750bp) protein (250aa)
tRNA pseudouridine synthase A; K06173 tRNA pseudouridine38-40 synthase [EC:5.4.99.12] Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
tRNA pseudouridine synthase A n=1 Tax=Desulfomonile tiedjei (strain ATCC 49306 / DSM 6799 / DCB-1) RepID=I4C033_DESTA
pseudouridylate synthase I
13_1_20cm_2_scaffold_5883_3
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists


comp(860..1417)
DNA (558bp) protein (186aa)
50S ribosomal protein L17 n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PCY1_9BACT
rplQ; 50S ribosomal protein L17; K02879 large subunit ribosomal protein L17 Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
rplQ; 50S ribosomal protein L17
13_1_20cm_2_scaffold_5883_4
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(1417..2496)
DNA (1080bp) protein (360aa)
rpoA; DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6) Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
rpoA; DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6)
DNA-directed RNA polymerase subunit alpha n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6THB7_9CHLR
13_1_20cm_2_scaffold_5883_5
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists


comp(2521..3144)
DNA (624bp) protein (208aa)
30S ribosomal protein S4 A n=1 Tax=Symbiobacterium thermophilum (strain T / IAM 14863) RepID=RS4A_SYMTH
rpsD; 30S ribosomal protein S4; K02986 small subunit ribosomal protein S4 Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
rpsD; 30S ribosomal protein S4
13_1_20cm_2_scaffold_5883_6
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists


comp(3144..3659)
DNA (516bp) protein (172aa)
30S ribosomal protein S11 n=1 Tax=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) RepID=RS11_HERA2
30S ribosomal protein S11; K02948 small subunit ribosomal protein S11 Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
30S ribosomal protein S11
13_1_20cm_2_scaffold_5883_7
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists


comp(3659..4042)
DNA (384bp) protein (128aa)
30S ribosomal protein S13 n=1 Tax=Paenibacillus sp. HGH0039 RepID=S3BIJ5_9BACL
rpsM; 30S ribosomal protein S13; K02952 small subunit ribosomal protein S13 Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
30S ribosomal protein S13
13_1_20cm_2_scaffold_5883_8
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(4221..4454)
DNA (234bp) protein (78aa)
Translation initiation factor IF-1 n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1CWN3_9CLOT
Translation initiation factor IF-1; K02518 translation initiation factor IF-1 Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
translation initiation factor IF-1
13_1_20cm_2_scaffold_5883_9
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(4551..5330)
DNA (780bp) protein (260aa)
methionine aminopeptidase; K01265 methionyl aminopeptidase [EC:3.4.11.18] Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
methionine aminopeptidase n=1 Tax=Alicyclobacillus pohliae RepID=UPI00037DAA45
methionine aminopeptidase
13_1_20cm_2_scaffold_5883_10
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(5327..5950)
DNA (624bp) protein (208aa)
adk; adenylate kinase (EC:2.7.4.3); K00939 adenylate kinase [EC:2.7.4.3] Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
hypothetical protein n=1 Tax=Meiothermus timidus RepID=UPI000381ABF8
adenylate kinase
13_1_20cm_2_scaffold_5883_11
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists


comp(5978..7261)
DNA (1284bp) protein (428aa)
Protein translocase subunit SecY n=1 Tax=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) RepID=B9KZW8_THERP
preprotein translocase subunit SecY; K03076 preprotein translocase subunit SecY Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
preprotein translocase subunit SecY
13_1_20cm_2_scaffold_5883_12
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists


comp(7266..7712)
DNA (447bp) protein (149aa)
50S ribosomal protein L15 n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UWY4_9AQUI
50S ribosomal protein L15; K02876 large subunit ribosomal protein L15 Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
50S ribosomal protein L15
13_1_20cm_2_scaffold_5883_13
RBG_16_Chloroflexi_68_14_curated, Chloroflexi, Bacteria

Not on your lists


comp(7712..7912)
DNA (201bp) protein (67aa)
50S ribosomal protein L30 n=1 Tax=Prevotella marshii DSM 16973 RepID=E0NVF7_9BACT
rpmD; 50S ribosomal protein L30; K02907 large subunit ribosomal protein L30 Tax=RBG_16_Chloroflexi_68_14_curated
rpmD; 50S ribosomal protein L30
13_1_20cm_2_scaffold_5883_14
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists


comp(7909..8418)
DNA (510bp) protein (170aa)
30S ribosomal protein S5 n=1 Tax=Cohnella laeviribosi RepID=UPI0003730BBB
rpsE; 30S ribosomal protein S5; K02988 small subunit ribosomal protein S5 Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
30S ribosomal protein S5
13_1_20cm_2_scaffold_5883_15
Thermaerobacter marianensis, Thermaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(8462..8815)
DNA (354bp) protein (118aa)
50S ribosomal protein L18 n=1 Tax=Thermaerobacter marianensis (strain ATCC 700841 / DSM 12885 / JCM 10246 / 7p75a) RepID=E6SKY4_THEM7
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337}; TaxID=644966 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Thermaerobacter.;" source
50S ribosomal protein L18
13_1_20cm_2_scaffold_5883_16
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists


comp(8819..9373)
DNA (555bp) protein (185aa)
50S ribosomal protein L6 n=2 Tax=Streptomyces RepID=V4IQM3_9ACTO
50S ribosomal protein L6; K02933 large subunit ribosomal protein L6 Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
rplF; 50S ribosomal protein L6
13_1_20cm_2_scaffold_5883_17
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists


comp(9381..9878)
DNA (498bp) protein (166aa)
30S ribosomal protein S8 n=1 Tax=Corynebacterium massiliense RepID=UPI0003B51653
30S ribosomal protein S8; K02994 small subunit ribosomal protein S8 Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
rpsH; ribosomal protein S8
13_1_20cm_2_scaffold_5883_18
Ktedonobacter racemifer, Ktedonobacter, Ktedonobacterales, Ktedonobacteria, Chloroflexi, Bacteria

Not on your lists


comp(9883..10068)
DNA (186bp) protein (62aa)
30S ribosomal protein S14 type Z n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6THD1_9CHLR
30S ribosomal protein S14 type Z {ECO:0000256|HAMAP-Rule:MF_01364, ECO:0000256|SAAS:SAAS00014984}; TaxID=485913 species="Bacteria; Chloroflexi; Ktedonobacteria; Ktedonobacterales; Ktedonobacteraceae;
rpsN; 30S ribosomal protein S14
13_1_20cm_2_scaffold_5883_19
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists


comp(10079..10627)
DNA (549bp) protein (183aa)
50S ribosomal protein L5 n=1 Tax=Symbiobacterium thermophilum (strain T / IAM 14863) RepID=RL5_SYMTH
rplE; 50S ribosomal protein L5 Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
rplE; 50S ribosomal protein L5
13_1_20cm_2_scaffold_5883_20
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists


comp(10627..10773)
DNA (147bp) protein (49aa)
50S ribosomal protein L24 n=2 Tax=Clostridium RepID=A7VR42_9CLOT
rplX; 50S ribosomal protein L24; K02895 large subunit ribosomal protein L24 Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
50S ribosomal protein L24
Displaying 20 items

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