ggKbase home page

13_1_20cm_2_scaffold_6181

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_2_scaffold_6181_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(2..970)
DNA (969bp) protein (323aa)
tRNA-specific 2-thiouridylase MnmA n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HU94_9FIRM
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
trmU; tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
13_1_20cm_2_scaffold_6181_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(977..1834)
DNA (858bp) protein (286aa)
Chromosome segregation DNA-binding protein n=1 Tax=Thermosediminibacter oceani (strain ATCC BAA-1034 / DSM 16646 / JW/IW-1228P) RepID=D9S1A5_THEOJ
chromosome segregation DNA-binding protein; K03497 chromosome partitioning protein, ParB family Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
chromosome segregation DNA-binding protein
13_1_20cm_2_scaffold_6181_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(1824..2588)
DNA (765bp) protein (255aa)
Cobyrinic acid ac-diamide synthase n=1 Tax=Desulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17) RepID=F6CKR0_DESK7 rbh
soj1; sporulation initiation inhibitor protein Soj Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Cobyrinic acid ac-diamide synthase
13_1_20cm_2_scaffold_6181_4
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(2945..3562)
DNA (618bp) protein (206aa)
glucose inhibited division protein; K03501 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] Tax=GWA2_Rokubacteria_73_35_curated
Ribosomal RNA small subunit methyltransferase G n=1 Tax=Desulfovibrio aespoeensis (strain ATCC 700646 / DSM 10631 / Aspo-2) RepID=E6VVU4_DESAO
glucose inhibited division protein
13_1_20cm_2_scaffold_6181_5
Kyrpidia tusciae, Kyrpidia, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(3559..4848)
DNA (1290bp) protein (430aa)
tRNA modification GTPase MnmE {ECO:0000256|HAMAP-Rule:MF_00379}; EC=3.6.-.- {ECO:0000256|HAMAP-Rule:MF_00379};; TaxID=562970 species="Bacteria; Firmicutes; Bacilli; Bacillales; Alicyclobacillaceae; Ky
hypothetical protein n=1 Tax=Alicyclobacillus pohliae RepID=UPI000362B0A9
tRNA modification GTPase TrmE
13_1_20cm_2_scaffold_6181_6
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(4913..5449)
DNA (537bp) protein (179aa)
Membrane protein insertase YidC n=2 Tax=Geobacter sulfurreducens RepID=YIDC_GEOSL
oxaA; inner membrane protein OxaA; K03217 preprotein translocase subunit YidC Tax=GWA2_Rokubacteria_73_35_curated
yidC; preprotein translocase subunit YidC
13_1_20cm_2_scaffold_6181_7
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(5470..6561)
DNA (1092bp) protein (364aa)
Uncharacterized protein n=1 Tax=Eimeria necatrix RepID=U6MUE8_9EIME
oxaA; inner membrane protein OxaA; K03217 preprotein translocase subunit YidC Tax=GWA2_Rokubacteria_73_35_curated
ftsY; signal recognition particle receptor; K03110 fused signal recognition particle receptor
13_1_20cm_2_scaffold_6181_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(6746..7000)
DNA (255bp) protein (85aa)
Ribonuclease P protein component n=2 Tax=Micromonospora RepID=D9T442_MICAI
Ribonuclease P protein component Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ribonuclease P protein component
13_1_20cm_2_scaffold_6181_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


comp(7090..7224)
DNA (135bp) protein (45aa)
50S ribosomal protein L34 n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LGX3_CHLTF
50S ribosomal protein L34; K02914 large subunit ribosomal protein L34 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
50S ribosomal protein L34
13_1_20cm_2_scaffold_6181_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

7484..8803
DNA (1320bp) protein (440aa)
Chromosomal replication initiator protein DnaA n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MHJ6_9BACT
dnaA; chromosomal replication initiator protein dnaA Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
dnaA; chromosomal replication initiator protein dnaA
13_1_20cm_2_scaffold_6181_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

8970..10064
DNA (1095bp) protein (365aa)
dnaN; DNA polymerase III subunit beta (EC:2.7.7.7) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
dnaN; DNA polymerase III subunit beta (EC:2.7.7.7)
DNA polymerase III subunit beta n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MLW3_9BACT
13_1_20cm_2_scaffold_6181_12
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

10102..11109
DNA (1008bp) protein (336aa)
DNA replication and repair protein RecF n=1 Tax=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) RepID=RECF_HELMI
DNA replication and repair protein RecF; K03629 DNA replication and repair protein RecF Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
recF; DNA replication and repair protein recf
13_1_20cm_2_scaffold_6181_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

11106..13481
DNA (2376bp) protein (792aa)
DNA gyrase B subunit (EC:5.99.1.3); K02470 DNA gyrase subunit B [EC:5.99.1.3] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
DNA gyrase B subunit (EC:5.99.1.3)
DNA gyrase subunit B n=1 Tax=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) RepID=B3E8P0_GEOLS
13_1_20cm_2_scaffold_6181_14
Saccharomyces cerevisiae, Saccharomyces, Saccharomycetales, Saccharomycetes, Ascomycota, Fungi

Not on your lists

13556..14182
DNA (627bp) protein (209aa)
A-agglutinin anchorage subunit n=1 Tax=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) RepID=AGA1_YEAST
Dan4p {ECO:0000313|EMBL:AJR58997.1}; TaxID=1293430 species="Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces.;" source="Sa
AGA1; Aga1p
13_1_20cm_2_scaffold_6181_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


14294..15943
DNA (1650bp) protein (550aa)
gyrA; DNA gyrase subunit A (EC:5.99.1.3) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
gyrA; DNA gyrase subunit A (EC:5.99.1.3)
DNA gyrase subunit A n=1 Tax=Candidatus Nitrospira defluvii RepID=D8P7F0_9BACT
13_1_20cm_2_scaffold_6181_16
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

15948..17234
DNA (1287bp) protein (429aa)
seryl-tRNA synthetase; K01875 seryl-tRNA synthetase [EC:6.1.1.11] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
seryl-tRNA synthetase (EC:6.1.1.11)
seryl-tRNA synthase n=1 Tax=Thermodesulfatator atlanticus RepID=UPI0003B739FE
13_1_20cm_2_scaffold_6181_17
unknown

Not on your lists

17277..17471
DNA (195bp) protein (65aa)

This feature has no annotations

13_1_20cm_2_scaffold_6181_18
RBG_16_Planctomycetes_41_13_curated, Planctomycetes, Bacteria

Not on your lists

comp(17483..18622)
DNA (1140bp) protein (380aa)
hypothetical protein n=1 Tax=Poribacteria bacterium WGA-3G RepID=UPI0003B6235C
Trypsin-like serine protease, typically periplasmic, containing C-terminal PDZ domain Tax=RBG_16_Planctomycetes_41_13_curated
serine protease
13_1_20cm_2_scaffold_6181_19
unknown

Not on your lists

19203..19331
DNA (129bp) protein (43aa)

This feature has no annotations

13_1_20cm_2_scaffold_6181_20
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

19348..19812
DNA (465bp) protein (155aa)
wrbA; NAD(P)H:quinone oxidoreductase WrbA (EC:1.6.5.2); K03809 Trp repressor binding protein Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
wrbA; NAD(P)H:quinone oxidoreductase WrbA (EC:1.6.5.2)
NAD(P)H:quinone oxidoreductase WrbA n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PI62_9BACT
Displaying 20 items

View Taxonomy