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13_1_20cm_2_scaffold_621

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_2_scaffold_621_1
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

2..319
DNA (318bp) protein (106aa)
nuoB; NADH dehydrogenase I subunit B; K00331 NADH-quinone oxidoreductase subunit B [EC:1.6.5.3] Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
NAD; NADH-ubiquinone oxidoreductase 20 kDa subunit (NADH dehydrogenase subunit 10) (EC:1.6.5.3)
NADH-quinone oxidoreductase subunit B n=1 Tax=Paenibacillus dendritiformis C454 RepID=H3SQ23_9BACL
13_1_20cm_2_scaffold_621_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

316..765
DNA (450bp) protein (150aa)
NADH (or F420H2) dehydrogenase subunit C; K00332 NADH-quinone oxidoreductase subunit C [EC:1.6.5.3] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
NADH-quinone oxidoreductase n=1 Tax=Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 / NCIMB 10081) RepID=D1A439_THECD
NADH (or F420H2) dehydrogenase subunit C
13_1_20cm_2_scaffold_621_3
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

791..1426
DNA (636bp) protein (212aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HP21_9BRAD
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
hypothetical protein
13_1_20cm_2_scaffold_621_4
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

1525..2688
DNA (1164bp) protein (388aa)
NAD(P)H-quinone oxidoreductase subunit H (EC:1.6.99.5); K00333 NADH-quinone oxidoreductase subunit D [EC:1.6.5.3] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
NAD(P)H-quinone oxidoreductase subunit H (EC:1.6.99.5)
NADH-quinone oxidoreductase subunit D n=1 Tax=candidate division ZIXI bacterium RBG-1 RepID=T0MNE4_9BACT
13_1_20cm_2_scaffold_621_5
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

2685..3668
DNA (984bp) protein (328aa)
respiratory-chain NADH dehydrogenase subunit 1; K00337 NADH-quinone oxidoreductase subunit H [EC:1.6.5.3] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
NADH dehydrogenase subunit H (EC:1.6.5.3)
NADH-quinone oxidoreductase subunit H alias=RBG1_25,RBG1_C00001G00025 id=1249583 tax=RBG1 species=Syntrophothermus lipocalidus genus=Syntrophothermus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes
13_1_20cm_2_scaffold_621_6
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

3658..4233
DNA (576bp) protein (192aa)
NADH-quinone oxidoreductase subunit i (EC:1.6.99.5); K00338 NADH-quinone oxidoreductase subunit I [EC:1.6.5.3] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
NADH-quinone oxidoreductase subunit i (EC:1.6.99.5)
NADH:ubiquinone oxidoreductase chain I-like protein (Fragment) alias=RBG1_26,RBG1_C00001G00026 id=1249584 tax=RBG1 species=Thiovulum sp. ES genus=Thiovulum taxon_order=Campylobacterales taxon_class=Epsilonproteobacteria phylum=Proteobacteria
13_1_20cm_2_scaffold_621_7
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

4230..4724
DNA (495bp) protein (165aa)
proton-translocating NADH-quinone oxidoreductase subunit J; K00339 NADH-quinone oxidoreductase subunit J [EC:1.6.5.3] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
NADH-ubiquinone/plastoquinone oxidoreductase chain 6; K00339 NADH-quinone oxidoreductase subunit J [EC:1.6.5.3] alias=RBG1_27,RBG1_C00001G00027 id=1249585 tax=RBG1 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria
proton-translocating NADH-quinone oxidoreductase subunit J
13_1_20cm_2_scaffold_621_8
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

4721..5023
DNA (303bp) protein (101aa)
NADH-ubiquinone oxidoreductase subunit 4L; K00340 NADH-quinone oxidoreductase subunit K [EC:1.6.5.3] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
NADH-quinone oxidoreductase subunit K alias=RBG1_28,RBG1_C00001G00028 id=1249586 tax=RBG1 species=Chlorobium phaeobacteroides genus=Chlorobium taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi
nuoK; NADH-quinone oxidoreductase chain K
13_1_20cm_2_scaffold_621_9
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

5028..6845
DNA (1818bp) protein (606aa)
proton-translocating NADH-quinone oxidoreductase subunit L; K00341 NADH-quinone oxidoreductase subunit L [EC:1.6.5.3] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Proton-translocating NADH-quinone oxidoreductase, chain L alias=RBG1_29,RBG1_C00001G00029 id=1249587 tax=RBG1 species=Kyrpidia tusciae genus=Kyrpidia taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes rbh
proton-translocating NADH-quinone oxidoreductase subunit L
13_1_20cm_2_scaffold_621_10
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

6850..8394
DNA (1545bp) protein (515aa)
proton-translocating NADH-quinone oxidoreductase, chain M (EC:1.6.99.5); K00342 NADH-quinone oxidoreductase subunit M [EC:1.6.5.3] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
proton-translocating NADH-quinone oxidoreductase, chain M (EC:1.6.99.5)
Proton-translocating NADH-quinone oxidoreductase subunit M n=1 Tax=candidate division ZIXI bacterium RBG-1 RepID=T0MHF9_9BACT
13_1_20cm_2_scaffold_621_11
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

8391..9803
DNA (1413bp) protein (471aa)
proton-translocating NADH-quinone oxidoreductase, chain N (EC:1.6.99.5); K00343 NADH-quinone oxidoreductase subunit N [EC:1.6.5.3] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
NAD(P)H-quinone oxidoreductase subunit 2 (EC:1.6.99.5); K00343 NADH-quinone oxidoreductase subunit N [EC:1.6.5.3] alias=RBG1_31,RBG1_C00001G00031 id=1249589 tax=RBG1 species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes
proton-translocating NADH-quinone oxidoreductase, chain N (EC:1.6.99.5)
13_1_20cm_2_scaffold_621_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

9917..10552
DNA (636bp) protein (212aa)
Transcriptional regulator, TetR family n=1 Tax=Geobacter sulfurreducens (strain DL-1 / KN400) RepID=D7AGN5_GEOSK
TetR family transcriptional regulator Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
TetR family transcriptional regulator
13_1_20cm_2_scaffold_621_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

10549..11160
DNA (612bp) protein (204aa)
RNA polymerase sigma factor n=1 Tax=Nitrospina gracilis 3/211 RepID=M1Z2C7_9BACT
ECF subfamily RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ECF subfamily RNA polymerase sigma-24 subunit
13_1_20cm_2_scaffold_621_14
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists


11258..11569
DNA (312bp) protein (104aa)
50S ribosomal protein L21 n=1 Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LHV2_HALO1
50S ribosomal protein L21; K02888 large subunit ribosomal protein L21 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
50S ribosomal protein L21
13_1_20cm_2_scaffold_621_15
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists


11576..11833
DNA (258bp) protein (86aa)
50S ribosomal protein L27 n=1 Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MHP5_RHOM4
50S ribosomal protein L27; K02899 large subunit ribosomal protein L27 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
50S ribosomal protein L27
13_1_20cm_2_scaffold_621_16
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

11873..12913
DNA (1041bp) protein (347aa)
GTPase Obg n=1 Tax=Ammonifex degensii (strain DSM 10501 / KC4) RepID=C9RAT0_AMMDK
GTPase obg; K03979 GTP-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
GTP-binding protein Obg/CgtA
13_1_20cm_2_scaffold_621_17
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

12910..14034
DNA (1125bp) protein (375aa)
gamma-glutamyl kinase (EC:2.7.2.11); K00931 glutamate 5-kinase [EC:2.7.2.11] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Glutamate 5-kinase n=1 Tax=Ammonifex degensii (strain DSM 10501 / KC4) RepID=C9RAT1_AMMDK
gamma-glutamyl kinase
13_1_20cm_2_scaffold_621_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

14044..15297
DNA (1254bp) protein (418aa)
proA; gamma-glutamyl phosphate reductase; K00147 glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
gamma-glutamyl phosphate reductase (EC:1.2.1.41)
Gamma-glutamyl phosphate reductase n=1 Tax=Desulfococcus multivorans DSM 2059 RepID=S7TE42_DESML rbh
13_1_20cm_2_scaffold_621_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

15333..15941
DNA (609bp) protein (203aa)
nicotinate (nicotinamide) nucleotide adenylyltransferase (EC:3.5.4.4); K00969 nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
nicotinate (nicotinamide) nucleotide adenylyltransferase (EC:2.7.7.18)
Probable nicotinate-nucleotide adenylyltransferase n=1 Tax=Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B) RepID=E8QZX4_ISOPI
13_1_20cm_2_scaffold_621_20
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

15938..16294
DNA (357bp) protein (119aa)
Ribosomal silencing factor RsfS n=1 Tax=Alicyclobacillus acidocaldarius (strain Tc-4-1) RepID=F8IF71_ALIAT
iojap family protein; K09710 ribosome-associated protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
ybeB; iojap family protein
13_1_20cm_2_scaffold_621_21
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

16397..16762
DNA (366bp) protein (122aa)
Transcriptional regulators, TraR/DksA family n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MJ60_9BACT
transcriptional regulators, TraR/DksA family Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
transcriptional regulators, TraR/DksA family
13_1_20cm_2_scaffold_621_22
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

16765..17700
DNA (936bp) protein (312aa)
TPR domain protein n=1 Tax=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) RepID=Q3A1E4_PELCD
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein
13_1_20cm_2_scaffold_621_23
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

17952..18527
DNA (576bp) protein (192aa)
hypothetical protein n=1 Tax=unclassified candidate division EM 19 RepID=UPI00035E3F8D
amidophosphoribosyltransferase Tax=GWA2_Rokubacteria_73_35_curated
amidophosphoribosyltransferase
13_1_20cm_2_scaffold_621_24
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

18573..19577
DNA (1005bp) protein (335aa)
cbbG; glyceraldehyde-3-phosphate dehydrogenase (EC:1.2.1.12) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
cbbG; glyceraldehyde-3-phosphate dehydrogenase (EC:1.2.1.12)
Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MJ64_9BACT
13_1_20cm_2_scaffold_621_25
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

19607..19969
DNA (363bp) protein (121aa)
phosphoglycerate kinase (EC:2.7.2.3); K00927 phosphoglycerate kinase [EC:2.7.2.3] Tax=GWA2_Rokubacteria_73_35_curated
Phosphoglycerate kinase (EC:2.7.2.3)
Phosphoglycerate kinase n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HSR2_9FIRM
13_1_20cm_2_scaffold_621_26
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

19966..20727
DNA (762bp) protein (254aa)
phosphoglycerate kinase (EC:2.7.2.3); K00927 phosphoglycerate kinase [EC:2.7.2.3] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
pgk; phosphoglycerate kinase (EC:2.7.2.3)
hypothetical protein n=1 Tax=Desulfurispora thermophila RepID=UPI000373B8DE
13_1_20cm_2_scaffold_621_27
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

20921..21442
DNA (522bp) protein (174aa)
tpiA; triosephosphate isomerase (EC:5.3.1.1); K01803 triosephosphate isomerase (TIM) [EC:5.3.1.1] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Triosephosphate isomerase n=1 Tax=Kosmotoga olearia (strain TBF 19.5.1) RepID=C5CHM4_KOSOT
triosephosphate isomerase
13_1_20cm_2_scaffold_621_28
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

21447..21683
DNA (237bp) protein (79aa)
Preprotein translocase, SecG subunit n=1 Tax=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) RepID=Q39U96_GEOMG
secG; preprotein translocase subunit SecG; K03075 preprotein translocase subunit SecG Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
secG; preprotein translocase subunit SecG
Displaying 28 items

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