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13_1_20cm_3_scaffold_1123

Search features with annotation key words

Displaying 24 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_3_scaffold_1123_1

Not on your lists

3..701
DNA (699bp) protein (233aa)
Aminoglycoside 6'-N-acetyltransferase n=1 Tax=uncultured bacterium RepID=F8UVN1_9BACT
Aminoglycoside 6'-N-acetyltransferase {ECO:0000313|EMBL:AEI30149.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
kanamycin acetyltransferase
13_1_20cm_3_scaffold_1123_2
Patulibacter medicamentivorans, Patulibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

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comp(920..1690)
DNA (771bp) protein (257aa)
Geranylgeranyl diphosphate synthase n=1 Tax=Patulibacter medicamentivorans RepID=H0E4U5_9ACTN
Geranylgeranyl diphosphate synthase {ECO:0000313|EMBL:EHN11298.1}; TaxID=1097667 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Patulibacteraceae; Patulibacter.;" source="Pat
polyprenyl synthetase
13_1_20cm_3_scaffold_1123_3
unknown

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comp(1687..1866)
DNA (180bp) protein (60aa)

This feature has no annotations

13_1_20cm_3_scaffold_1123_4
RBG_16_Actinobacteria_67_10_curated, Acidimicrobiia, Actinobacteria, Bacteria

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comp(1973..2356)
DNA (384bp) protein (128aa)
NusB antitermination factor; K03625 N utilization substance protein B Tax=RBG_16_Actinobacteria_67_10_curated
N utilization substance protein B homolog id=3787638 bin=GWC2_Deltaproteobacteria_55_46 species=Corallococcus coralloides genus=Corallococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_55_46 organism_group=Deltaproteobacteria organism_desc=Clade sibling to the Geobacter/Pelobacter
NusB antitermination factor
13_1_20cm_3_scaffold_1123_5
Microbispora sp. ATCC PTA-5024, Microbispora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

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comp(2353..2658)
DNA (306bp) protein (102aa)
Uncharacterized protein n=1 Tax=Thermobispora bispora (strain ATCC 19993 / DSM 43833 / CBS 139.67 / JCM 10125 / NBRC 14880 / R51) RepID=D6Y9N8_THEBD
Stress-like protein {ECO:0000313|EMBL:ETK35500.1}; TaxID=316330 species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Microbispora.;" source="Microbispora sp. ATCC PTA-5024.;"
13_1_20cm_3_scaffold_1123_6
Synechococcus sp. RS9916, Synechococcus, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

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comp(2655..3380)
DNA (726bp) protein (242aa)
Acetyl-CoA carboxylase {ECO:0000313|EMBL:EAU74860.1}; EC=6.4.1.2 {ECO:0000313|EMBL:EAU74860.1};; TaxID=221359 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus.;" s
accC; acetyl-CoA carboxylase biotin carboxylase subunit (EC:6.4.1.2)
Acetyl-CoA carboxylase, biotin carboxylase subunit n=1 Tax=Synechocystis sp. PCC 7509 RepID=L8KY31_9SYNC
13_1_20cm_3_scaffold_1123_7
Ammonifex degensii, Ammonifex, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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comp(4037..5866)
DNA (1830bp) protein (610aa)
Oxaloacetate decarboxylase alpha subunit n=1 Tax=Ammonifex degensii (strain DSM 10501 / KC4) RepID=C9R7W5_AMMDK
Oxaloacetate decarboxylase alpha subunit {ECO:0000313|EMBL:ACX52394.1}; TaxID=429009 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Moorella group; Ammonif
pyruvate carboxylase subunit B
13_1_20cm_3_scaffold_1123_8
Patulibacter medicamentivorans, Patulibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

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comp(5876..6442)
DNA (567bp) protein (189aa)
Elongation factor P n=1 Tax=Patulibacter medicamentivorans RepID=H0EC56_9ACTN
Elongation factor P {ECO:0000256|HAMAP-Rule:MF_00141}; Short=EF-P {ECO:0000256|HAMAP-Rule:MF_00141};; TaxID=1097667 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Patulibacte
translation elongation factor P
13_1_20cm_3_scaffold_1123_9
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

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comp(6442..7479)
DNA (1038bp) protein (346aa)
Peptidase M24 n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3FCW7_CONWI
Peptidase M24 {ECO:0000313|EMBL:ADB51479.1}; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strai
peptidase M24
13_1_20cm_3_scaffold_1123_10
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

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comp(7476..7904)
DNA (429bp) protein (143aa)
3-dehydroquinate dehydratase {ECO:0000256|HAMAP-Rule:MF_00169}; Short=3-dehydroquinase {ECO:0000256|HAMAP-Rule:MF_00169};; EC=4.2.1.10 {ECO:0000256|HAMAP-Rule:MF_00169};; Type II DHQase {ECO:0000256|H
3-dehydroquinate dehydratase (EC:4.2.1.10)
3-dehydroquinate dehydratase n=1 Tax=Patulibacter americanus RepID=UPI0003B58469
13_1_20cm_3_scaffold_1123_11
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

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comp(8025..9359)
DNA (1335bp) protein (445aa)
3-dehydroquinate synthase {ECO:0000313|EMBL:ADB51477.1}; EC=2.7.1.71 {ECO:0000313|EMBL:ADB51477.1};; EC=4.2.3.4 {ECO:0000313|EMBL:ADB51477.1};; TaxID=469383 species="Bacteria; Actinobacteria; Thermole
3-dehydroquinate synthase (EC:2.7.1.71 4.2.3.4)
3-dehydroquinate synthase n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3FCW5_CONWI
13_1_20cm_3_scaffold_1123_12
Candidatus Desulforudis audaxviator, Candidatus Desulforudis, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9386..10468)
DNA (1083bp) protein (361aa)
Chorismate synthase {ECO:0000255|HAMAP-Rule:MF_00300}; Short=CS {ECO:0000255|HAMAP-Rule:MF_00300};; EC=4.2.3.5 {ECO:0000255|HAMAP-Rule:MF_00300};; 5-enolpyruvylshikimate-3-phosphate phospholyase {ECO:
AroC; chorismate synthase (EC:4.2.3.5)
Chorismate synthase n=1 Tax=Desulforudis audaxviator (strain MP104C) RepID=AROC_DESAP
13_1_20cm_3_scaffold_1123_13
RBG_16_Actinobacteria_68_21_curated, Acidimicrobiia, Actinobacteria, Bacteria

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comp(10468..11166)
DNA (699bp) protein (233aa)
aroE; shikimate 5-dehydrogenase (EC:1.1.1.25); K00014 shikimate dehydrogenase [EC:1.1.1.25] Tax=RBG_16_Actinobacteria_68_21_curated
Shikimate dehydrogenase n=1 Tax=Dehalogenimonas lykanthroporepellens (strain ATCC BAA-1523 / JCM 15061 / BL-DC-9) RepID=D8K3N0_DEHLB
shikimate 5-dehydrogenase
13_1_20cm_3_scaffold_1123_14
RBG_16_Actinobacteria_64_13_curated, Rubrobacteria, Actinobacteria, Bacteria

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comp(11163..12074)
DNA (912bp) protein (304aa)
Aminodeoxychorismate lyase n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3FCU3_CONWI
aminodeoxychorismate lyase; K07082 UPF0755 protein Tax=RBG_16_Actinobacteria_64_13_curated
aminodeoxychorismate lyase
13_1_20cm_3_scaffold_1123_15
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

comp(12088..12375)
DNA (288bp) protein (96aa)
Putative Holliday junction resolvase {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086483}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086510};; TaxID=469383 specie
Putative Holliday junction resolvase n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3FCU2_CONWI
Holliday junction resolvase YqgF
13_1_20cm_3_scaffold_1123_16
RBG_16_Actinobacteria_64_13_curated, Rubrobacteria, Actinobacteria, Bacteria

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comp(12372..14840)
DNA (2469bp) protein (823aa)
alanyl-tRNA synthetase (EC:6.1.1.7); K01872 alanyl-tRNA synthetase [EC:6.1.1.7] Tax=RBG_16_Actinobacteria_64_13_curated
Alanine--tRNA ligase n=1 Tax=Patulibacter medicamentivorans RepID=H0EBE2_9ACTN
alanyl-tRNA synthetase
13_1_20cm_3_scaffold_1123_17
RBG_16_Actinobacteria_64_13_curated, Rubrobacteria, Actinobacteria, Bacteria

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comp(14883..15647)
DNA (765bp) protein (255aa)
RNA polymerase, sigma 28 subunit, Sig B/F/G subfamily n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F264_CONWI
FliA/WhiG family RNA polymerase sigma factor; K03090 RNA polymerase sigma-B factor Tax=RBG_16_Actinobacteria_64_13_curated
sigma-B/F/G subfamily RNA polymerase sigma-28 factor
13_1_20cm_3_scaffold_1123_18
unknown

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comp(15649..16038)
DNA (390bp) protein (130aa)

This feature has no annotations

13_1_20cm_3_scaffold_1123_19
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

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comp(16035..17276)
DNA (1242bp) protein (414aa)
tRNA-specific 2-thiouridylase MnmA {ECO:0000256|HAMAP-Rule:MF_00144}; EC=2.8.1.- {ECO:0000256|HAMAP-Rule:MF_00144};; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterale
tRNA-specific 2-thiouridylase MnmA n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3FCS6_CONWI
tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
13_1_20cm_3_scaffold_1123_20
unknown

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comp(17611..18027)
DNA (417bp) protein (139aa)

This feature has no annotations

13_1_20cm_3_scaffold_1123_21
Acremonium chrysogenum, Acremonium, Hypocreales, Hypocreomycetidae, Ascomycota, Fungi

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comp(18024..18509)
DNA (486bp) protein (162aa)
Possible TolA protein n=1 Tax=Pelagibaca bermudensis (strain JCM 13377 / KCTC 12554 / HTCC2601) RepID=Q0FL87_PELBH
Cell surface glycoprotein-like protein {ECO:0000313|EMBL:KFH46025.1}; TaxID=857340 species="Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Hypocreomycetidae; Hypocreales; mito
ftsY; signal recognition particle receptor
13_1_20cm_3_scaffold_1123_22
Penicillium expansum, Penicillium, Eurotiales, Eurotiomycetidae, Ascomycota, Fungi

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comp(18506..19198)
DNA (693bp) protein (231aa)
Putative uncharacterized protein n=1 Tax=Pediculus humanus subsp. corporis RepID=E0VWI6_PEDHC
Uncharacterized protein {ECO:0000313|EMBL:KGO49870.1}; TaxID=27334 species="Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Penicil
hypothetical protein
13_1_20cm_3_scaffold_1123_23
Streptomyces mobaraensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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comp(19394..20149)
DNA (756bp) protein (252aa)
Large Ala/Glu-rich protein (Fragment) n=1 Tax=Streptomyces mobaraensis NBRC 13819 = DSM 40847 RepID=M3BE60_STRMB
Large Ala/Glu-rich protein {ECO:0000313|EMBL:EME97854.1}; Flags: Fragment;; TaxID=1223523 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces m
hypothetical protein
13_1_20cm_3_scaffold_1123_24
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

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comp(20197..21003)
DNA (807bp) protein (269aa)
aspS; aspartyl-tRNA synthetase; K01876 aspartyl-tRNA synthetase [EC:6.1.1.12] Tax=RBG_16_Actinobacteria_68_12_curated
Aspartate--tRNA ligase n=2 Tax=Geobacter metallireducens RepID=SYD_GEOMG
aspS; aspartyl-tRNA ligase
Displaying 24 items

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