ggKbase home page

13_1_20cm_3_scaffold_331

Search features with annotation key words

Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_3_scaffold_331_1
RBG_13_Deltaproteobacteria_61_14_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..1733
DNA (1731bp) protein (577aa)
glycoside hydrolase family protein; K15855 exo-1,4-beta-D-glucosaminidase [EC:3.2.1.165] Tax=RBG_13_Deltaproteobacteria_61_14_curated
Glycoside hydrolase family 2, sugar binding protein n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IRY9_KORVE
glycoside hydrolase
13_1_20cm_3_scaffold_331_2
RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated, Acidobacteria, Bacteria

Not on your lists

1897..2724
DNA (828bp) protein (276aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00035D9792
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated
transporter
13_1_20cm_3_scaffold_331_3
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

2924..3343
DNA (420bp) protein (140aa)
Transcriptional regulator, XRE family n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IV28_KORVE
Transcriptional regulator, XRE family {ECO:0000313|EMBL:ABF39272.1}; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter ver
XRE family transcriptional regulator
13_1_20cm_3_scaffold_331_4
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(3414..5330)
DNA (1917bp) protein (639aa)
ABC transporter, ATPase subunit n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IMS1_KORVE rbh
ABC transporter, ATPase subunit {ECO:0000313|EMBL:ABF41829.1}; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatili
ABC transporter ATPase
13_1_20cm_3_scaffold_331_5
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

comp(5627..6817)
DNA (1191bp) protein (397aa)
Geranylgeranyl reductase n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01YQ3_SOLUE rbh
geranylgeranyl reductase Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
geranylgeranyl reductase
13_1_20cm_3_scaffold_331_6
Magnetospirillum magnetotacticum, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6904..8436)
DNA (1533bp) protein (511aa)
hydrolase n=1 Tax=Dietzia sp. UCD-THP RepID=UPI0003738DE8
Aromatic-L-amino-acid decarboxylase {ECO:0000313|EMBL:KIL98476.1}; TaxID=272627 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source=
hypothetical protein
13_1_20cm_3_scaffold_331_7
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

8512..9009
DNA (498bp) protein (166aa)
cytidyltransferase-related domain-containing protein (EC:2.7.1.-) Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
cytidyltransferase-related domain-containing protein (EC:2.7.1.-)
Putative uncharacterized protein n=1 Tax=uncultured bacterium 293 RepID=E3T602_9BACT
13_1_20cm_3_scaffold_331_8
R_Acidobacteria_60_20, Acidobacteria, Bacteria

Not on your lists

9020..12451
DNA (3432bp) protein (1144aa)
transcription-repair coupling factor; K03723 transcription-repair coupling factor (superfamily II helicase) [EC:3.6.4.-] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_60_20_curated
Transcription-repair-coupling factor n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01PU0_SOLUE
transcription-repair coupling factor
13_1_20cm_3_scaffold_331_9
RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated, Acidobacteria, Bacteria

Not on your lists

12473..13138
DNA (666bp) protein (222aa)
PpiC-type peptidyl-prolyl cis-trans isomerase n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IIS5_KORVE
PpiC-type peptidyl-prolyl cis-trans isomerase Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated
PpiC-type peptidyl-prolyl cis-trans isomerase
13_1_20cm_3_scaffold_331_10
Acidobacterium capsulatum, Acidobacterium, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

13338..13682
DNA (345bp) protein (115aa)
Peptidylprolyl isomerase {ECO:0000256|SAAS:SAAS00143148}; EC=5.2.1.8 {ECO:0000256|SAAS:SAAS00143148};; TaxID=240015 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Acidobacteriu
peptidylprolyl cis-trans isomerase SurA (EC:5.2.1.8)
Peptidylprolyl cis-trans isomerase SurA, putative n=1 Tax=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) RepID=C1F537_ACIC5
13_1_20cm_3_scaffold_331_11
RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated, Acidobacteria, Bacteria

Not on your lists

13679..14665
DNA (987bp) protein (329aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI000367A98E
metal dependent phosphohydrolase; K03698 CMP-binding protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated
metal dependent phosphohydrolase
13_1_20cm_3_scaffold_331_12
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

14670..15650
DNA (981bp) protein (327aa)
tRNA-dihydrouridine synthase n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01RW9_SOLUE
nifR3 family TIM-barrel protein Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
nifR3 family TIM-barrel protein
13_1_20cm_3_scaffold_331_13
RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated, Acidobacteria, Bacteria

Not on your lists

15689..16078
DNA (390bp) protein (130aa)
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated
13_1_20cm_3_scaffold_331_14
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16130..16693)
DNA (564bp) protein (188aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P782_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS38457.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717
IS493 family transposase
13_1_20cm_3_scaffold_331_15
R_Acidobacteria_59_13, Acidobacteria, Bacteria

Not on your lists

comp(17175..18089)
DNA (915bp) protein (305aa)
hypothetical protein; K07056 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_59_13_curated
Ribosomal RNA small subunit methyltransferase I n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IVR0_KORVE
hypothetical protein
Displaying 15 items

View Taxonomy