ggKbase home page

13_1_20cm_3_scaffold_401

Search features with annotation key words

Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_3_scaffold_401_1
unknown

Not on your lists

comp(2..61)
DNA (60bp) protein (20aa)

This feature has no annotations

13_1_20cm_3_scaffold_401_2
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

comp(173..958)
DNA (786bp) protein (262aa)
tRNA (Guanine37-N(1)-) methyltransferase (EC:2.1.1.31); K00554 tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
tRNA (guanine-N(1)-)-methyltransferase n=1 Tax=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) RepID=C1F3B2_ACIC5
trmD; tRNA (guanine-N(1)-)-methyltransferase
13_1_20cm_3_scaffold_401_3
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1183..3654
DNA (2472bp) protein (824aa)
Uncharacterized protein n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4XWP4_SORCE
Uncharacterized protein {ECO:0000313|EMBL:AGP36791.1}; TaxID=1254432 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium c
hypothetical protein
13_1_20cm_3_scaffold_401_4
Terriglobus saanensis, Terriglobus, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(4020..4463)
DNA (444bp) protein (148aa)
Ribosome maturation factor RimM n=1 Tax=Terriglobus saanensis (strain ATCC BAA-1853 / DSM 23119 / SP1PR4) RepID=E8V8H0_TERSS
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00055369}; TaxID=401053 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Terriglobus.;" sou
16S rRNA processing protein RimM
13_1_20cm_3_scaffold_401_5
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

comp(4652..4885)
DNA (234bp) protein (78aa)
UPF0109 protein Acid_2571 n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q024L6_SOLUE
RNA-binding protein; K06960 Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
RNA-binding protein
13_1_20cm_3_scaffold_401_6
RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated, Acidobacteria, Bacteria

Not on your lists


comp(4951..5190)
DNA (240bp) protein (80aa)
30S ribosomal protein S16 n=1 Tax=uncultured Desulfobacterium sp. RepID=E1YJ41_9DELT
30S ribosomal protein S16; K02959 small subunit ribosomal protein S16 Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated
Ribosomal protein S16
13_1_20cm_3_scaffold_401_7
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

5367..6545
DNA (1179bp) protein (393aa)
Beta-lactamase n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q024P5_SOLUE
Beta-lactamase {ECO:0000313|EMBL:ABJ83531.1}; Flags: Precursor;; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibact
beta-lactamase
13_1_20cm_3_scaffold_401_8
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists


comp(6565..7908)
DNA (1344bp) protein (448aa)
Signal recognition particle protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q024L4_SOLUE
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales
signal recognition particle subunit FFH/SRP54 (srp54)
13_1_20cm_3_scaffold_401_9
RBG_13_Deltaproteobacteria_47_9_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8175..8582
DNA (408bp) protein (136aa)
dienelactone hydrolase Tax=RBG_13_Deltaproteobacteria_47_9_curated
dienelactone hydrolase-like enzyme
Dienelactone hydrolase id=1718307 bin=GWB2_Deltaproteobacteria_65_81 species=Gloeocapsa sp. PCC 7428 genus=Gloeocapsa taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWB2_Deltaproteobacteria_65_81 organism_group=Deltaproteobacteria organism_desc=Good +
13_1_20cm_3_scaffold_401_10
Agarivorans albus, Agarivorans, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8533..8727
DNA (195bp) protein (65aa)
Dienelactone hydrolase n=1 Tax=Agarivorans albus MKT 106 RepID=R9PL61_AGAAL
Dienelactone hydrolase {ECO:0000313|EMBL:GAD02119.1}; TaxID=1331007 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Agarivorans.;" source="Agarivorans albus
13_1_20cm_3_scaffold_401_11
RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated, Acidobacteria, Bacteria

Not on your lists

comp(8976..10517)
DNA (1542bp) protein (514aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated
Uncharacterized protein id=2082891 bin=GWD2_Deltaproteobacteria_55_8 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria rbh
hypothetical protein
13_1_20cm_3_scaffold_401_12
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(10851..13805)
DNA (2955bp) protein (985aa)
Putative uncharacterized protein n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1ITV4_KORVE rbh
Uncharacterized protein {ECO:0000313|EMBL:ABF39696.1}; Flags: Precursor;; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacte
hypothetical protein
13_1_20cm_3_scaffold_401_13
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

comp(13917..14894)
DNA (978bp) protein (326aa)
Peptidase M56, BlaR1 n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q028S1_SOLUE
Peptidase M56, BlaR1 {ECO:0000313|EMBL:ABJ82481.1}; Flags: Precursor;; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="So
peptidase M56, BlaR1
13_1_20cm_3_scaffold_401_14
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

comp(14891..15355)
DNA (465bp) protein (155aa)
Transcriptional repressor, CopY family n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q028S2_SOLUE
Transcriptional repressor, CopY family {ECO:0000313|EMBL:ABJ82480.1}; Flags: Precursor;; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Soliba
CopY family transcriptional regulator
13_1_20cm_3_scaffold_401_15
Arenimonas donghaensis, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15618..16472)
DNA (855bp) protein (285aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI0003475EEB
Uncharacterized protein {ECO:0000313|EMBL:KFL36487.1}; TaxID=1121014 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas donghae
hypothetical protein
13_1_20cm_3_scaffold_401_16
Acidobacterium capsulatum, Acidobacterium, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(16622..17596)
DNA (975bp) protein (325aa)
Peptidase, S9C (Acylaminoacyl-peptidase) family {ECO:0000313|EMBL:ACO31580.1}; EC=3.4.21.- {ECO:0000313|EMBL:ACO31580.1};; TaxID=240015 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteri
S9C (acylaminoacyl-peptidase) family peptidase (EC:3.4.21.-)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 89 RepID=UPI000365BEBD
Displaying 16 items

View Taxonomy