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13_1_20cm_3_scaffold_3756

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Displaying 30 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_3_scaffold_3756_1
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..821
DNA (819bp) protein (273aa)
zinc protease n=1 Tax=Bradyrhizobium japonicum RepID=UPI000366B73E rbh
Zinc protease {ECO:0000313|EMBL:BAR58691.1}; TaxID=1355477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficie
zinc protease
13_1_20cm_3_scaffold_3756_2
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

913..1275
DNA (363bp) protein (121aa)
Class I peptide chain release factor n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QIP5_NITHX
Peptide chain release factor I {ECO:0000313|EMBL:KIZ37204.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudo
peptidyl-tRNA hydrolase domain-containing protein
13_1_20cm_3_scaffold_3756_3
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1284..3086
DNA (1803bp) protein (601aa)
DNA mismatch repair protein MutL n=1 Tax=Bradyrhizobium elkanii RepID=UPI00036C3210
DNA mismatch repair protein MutL {ECO:0000256|HAMAP-Rule:MF_00149, ECO:0000256|SAAS:SAAS00058680}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae;
mutL; DNA mismatch repair protein
13_1_20cm_3_scaffold_3756_4
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3112..3666)
DNA (555bp) protein (185aa)
Bll7494 protein n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89DE5_BRADU
Bll7494 protein {ECO:0000313|EMBL:BAC52759.1}; TaxID=224911 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoeffici
hypothetical protein
13_1_20cm_3_scaffold_3756_5
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3695..3826)
DNA (132bp) protein (44aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiace
Pseudouridine synthase n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1IKR8_9BRAD
pseudouridine synthase Rsu
13_1_20cm_3_scaffold_3756_6
unknown

Not on your lists

4045..4305
DNA (261bp) protein (87aa)

This feature has no annotations

13_1_20cm_3_scaffold_3756_7
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4413..5558)
DNA (1146bp) protein (382aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiace
Pseudouridine synthase n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q21AV9_RHOPB
pseudouridine synthase Rsu
13_1_20cm_3_scaffold_3756_8
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5806..6234
DNA (429bp) protein (143aa)
tRNA-specific adenosine deaminase {ECO:0000256|HAMAP-Rule:MF_00972}; EC=3.5.4.33 {ECO:0000256|HAMAP-Rule:MF_00972};; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales;
5-aminolevulinate synthase n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HEG4_9BRAD
CMP deaminase
13_1_20cm_3_scaffold_3756_9
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6218..7126)
DNA (909bp) protein (303aa)
haloacetate dehalogenase (EC:3.8.1.3)
Putative hydrolase n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TK30_9BRAD
Putative hydrolase {ECO:0000313|EMBL:CCE06818.1}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM
13_1_20cm_3_scaffold_3756_10
Hyphomonas neptunium, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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7244..8395
DNA (1152bp) protein (384aa)
acyl-CoA dehydrogenase n=1 Tax=Sandarakinorhabdus limnophila RepID=UPI0003B31C69
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:ABI78327.1}; TaxID=228405 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas neptunium
acyl-CoA dehydrogenase
13_1_20cm_3_scaffold_3756_11
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8641..9918)
DNA (1278bp) protein (426aa)
Phosphoribosylamine--glycine ligase {ECO:0000256|HAMAP-Rule:MF_00138}; EC=6.3.4.13 {ECO:0000256|HAMAP-Rule:MF_00138};; GARS {ECO:0000256|HAMAP-Rule:MF_00138}; Glycinamide ribonucleotide synthetase {EC
phosphoribosylamine--glycine ligase (EC:6.3.4.13)
Phosphoribosylamine--glycine ligase n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SPI6_NITWN rbh
13_1_20cm_3_scaffold_3756_12
Bradyrhizobium sp. WSM1253, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9998..10309)
DNA (312bp) protein (104aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. WSM1253 RepID=I2QHK3_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EIG59259.1}; TaxID=319003 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp.
hypothetical protein
13_1_20cm_3_scaffold_3756_13
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10491..12101
DNA (1611bp) protein (537aa)
Exodeoxyribonuclease 7 large subunit {ECO:0000256|HAMAP-Rule:MF_00378, ECO:0000256|SAAS:SAAS00195504}; EC=3.1.11.6 {ECO:0000256|HAMAP-Rule:MF_00378, ECO:0000256|SAAS:SAAS00195506};; Exodeoxyribonuclea
exodeoxyribonuclease VII large subunit n=1 Tax=Bradyrhizobium elkanii RepID=UPI00037ACADB rbh
exodeoxyribonuclease VII large subunit
13_1_20cm_3_scaffold_3756_14
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12118..12951)
DNA (834bp) protein (278aa)
dienelactone hydrolase n=1 Tax=Bradyrhizobium japonicum RepID=UPI0003678DD3 rbh
Uncharacterized protein {ECO:0000313|EMBL:BAL07066.1}; TaxID=1037409 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium ja
hypothetical protein
13_1_20cm_3_scaffold_3756_15
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13141..13368
DNA (228bp) protein (76aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TCX5_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:KJC58304.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp
hypothetical protein
13_1_20cm_3_scaffold_3756_16
Bradyrhizobium sp. YR681, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13365..14381)
DNA (1017bp) protein (339aa)
Tetraacyldisaccharide 4'-kinase {ECO:0000256|HAMAP-Rule:MF_00409, ECO:0000256|SAAS:SAAS00093884}; EC=2.7.1.130 {ECO:0000256|HAMAP-Rule:MF_00409, ECO:0000256|SAAS:SAAS00093878};; Lipid A 4'-kinase {ECO
Tetraacyldisaccharide 4'-kinase n=1 Tax=Bradyrhizobium sp. YR681 RepID=J2WT89_9BRAD
lpxK; tetraacyldisaccharide 4'-kinase
13_1_20cm_3_scaffold_3756_17
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14374..15678)
DNA (1305bp) protein (435aa)
3-deoxy-D-manno-octulosonic acid transferase n=1 Tax=Bradyrhizobium japonicum RepID=UPI0003763651
3-deoxy-D-manno-octulosonic acid transferase {ECO:0000313|EMBL:KJC58302.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" sour
kdtA; 3-deoxy-D-manno-octulosonic acid transferase
13_1_20cm_3_scaffold_3756_18
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15671..16384)
DNA (714bp) protein (238aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TCX8_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:CCE04316.1}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp.
hypothetical protein
13_1_20cm_3_scaffold_3756_19
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16381..16629)
DNA (249bp) protein (83aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PFB9_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS37093.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717
hypothetical protein
13_1_20cm_3_scaffold_3756_20
Bradyrhizobium sp. WSM1253, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16687..17505)
DNA (819bp) protein (273aa)
Inositol monophosphatase/fructose-1,6-bisphosphatase family protein n=1 Tax=Bradyrhizobium sp. WSM1253 RepID=I2QHL6_9BRAD rbh
Inositol monophosphatase/fructose-1,6-bisphosphatase family protein {ECO:0000313|EMBL:EIG59272.1}; TaxID=319003 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae;
putative inositol monophosphatase family protein
13_1_20cm_3_scaffold_3756_21
Bradyrhizobium sp. WSM1253, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17575..18789)
DNA (1215bp) protein (405aa)
Putative Zn-dependent protease-like protein n=1 Tax=Bradyrhizobium sp. WSM1253 RepID=I2QHL7_9BRAD
Putative Zn-dependent protease-like protein {ECO:0000313|EMBL:EIG59273.1}; TaxID=319003 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source
modulator protein
13_1_20cm_3_scaffold_3756_22
unknown

Not on your lists

comp(19045..19380)
DNA (336bp) protein (112aa)

This feature has no annotations

13_1_20cm_3_scaffold_3756_23
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19646..20578)
DNA (933bp) protein (311aa)
4-hydroxybenzoate octaprenyltransferase {ECO:0000256|SAAS:SAAS00188627}; EC=2.5.1.- {ECO:0000256|SAAS:SAAS00188633};; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales;
4-hydroxybenzoate octaprenyltransferase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QIM8_NITHX rbh
ubiA; 4-hydroxybenzoate polyprenyltransferase
13_1_20cm_3_scaffold_3756_24
Bradyrhizobium sp. LTSP849, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20589..21257)
DNA (669bp) protein (223aa)
D-methionine transport system substrate-binding protein n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1IHG8_9BRAD
Signal peptide protein {ECO:0000313|EMBL:KJC49988.1}; TaxID=1615890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp.
hypothetical protein
13_1_20cm_3_scaffold_3756_25
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21462..22223
DNA (762bp) protein (254aa)
Ribosomal RNA small subunit methyltransferase E {ECO:0000256|PIRNR:PIRNR015601}; EC=2.1.1.193 {ECO:0000256|PIRNR:PIRNR015601};; TaxID=1355477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rh
16S rRNA methyltransferase n=1 Tax=Bradyrhizobium japonicum RepID=UPI00036E17E8
16S ribosomal RNA methyltransferase RsmE
13_1_20cm_3_scaffold_3756_26
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22373..23548
DNA (1176bp) protein (392aa)
ATP phosphoribosyltransferase n=1 Tax=Bradyrhizobium elkanii RepID=UPI000306FCAB
ATP phosphoribosyltransferase {ECO:0000313|EMBL:KJC45134.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizob
hypothetical protein
13_1_20cm_3_scaffold_3756_27
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23545..24522
DNA (978bp) protein (326aa)
hisG; ATP phosphoribosyltransferase (EC:2.4.2.17)
ATP phosphoribosyltransferase n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=HIS1_RHOPS rbh
ATP phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00079, ECO:0000256|SAAS:SAAS00046302}; Short=ATP-PRT {ECO:0000256|HAMAP-Rule:MF_00079};; Short=ATP-PRTase {ECO:0000256|HAMAP-Rule:MF_00079};; E
13_1_20cm_3_scaffold_3756_28
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24600..25646
DNA (1047bp) protein (349aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7D3I6_BRAJP rbh
Uncharacterized protein {ECO:0000313|EMBL:BAL07046.1}; TaxID=1037409 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium ja
hypothetical protein
13_1_20cm_3_scaffold_3756_29
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25643..26488
DNA (846bp) protein (282aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TCZ1_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:KGJ63910.1}; TaxID=754504 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium dia
hypothetical protein
13_1_20cm_3_scaffold_3756_30
Bradyrhizobium sp. LTSP849, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26611..27147
DNA (537bp) protein (179aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TCZ2_9BRAD
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KJC49982.1}; TaxID=1615890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source=
hypothetical protein
Displaying 30 items

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