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13_1_20cm_3_scaffold_6263

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_3_scaffold_6263_1
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2..85
DNA (84bp) protein (28aa)
Elongation factor Tu n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WVH2_PSEUU
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=743721 species="Bacteria; Proteobacteria; Gammaproteobacter
13_1_20cm_3_scaffold_6263_2
unknown

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comp(206..610)
DNA (405bp) protein (135aa)

This feature has no annotations

13_1_20cm_3_scaffold_6263_3
Cupriavidus necator, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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857..2518
DNA (1662bp) protein (554aa)
hypothetical protein, partial n=1 Tax=Xanthomonas sp. M97 RepID=UPI0003B715F2
Uncharacterized protein {ECO:0000313|EMBL:AEI76003.1}; TaxID=1042878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus necato
hypothetical protein
13_1_20cm_3_scaffold_6263_trna_1
unknown

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2778..2850
DNA (73bp)
transferRNA
13_1_20cm_3_scaffold_6263_4
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

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2954..3151
DNA (198bp) protein (66aa)
Protein translocase subunit SecE n=1 Tax=Oceanibaculum indicum P24 RepID=K2IYL5_9PROT
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
preprotein translocase subunit SecE
13_1_20cm_3_scaffold_6263_5
Magnetospirillum magnetotacticum, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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3167..3697
DNA (531bp) protein (177aa)
Transcription termination/antitermination protein NusG n=2 Tax=Rhodospirillum rubrum RepID=G2T788_RHORU rbh
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948}; TaxID=272627 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magn
nusG; transcription antitermination protein NusG
13_1_20cm_3_scaffold_6263_6
Phaeospirillum fulvum, Phaeospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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3728..4159
DNA (432bp) protein (144aa)
50S ribosomal protein L11 n=1 Tax=Phaeospirillum fulvum MGU-K5 RepID=S9S7V6_PHAFV
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736}; TaxID=1316936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Phaeospirillum.;" source="Phaeos
50S ribosomal protein L11
13_1_20cm_3_scaffold_6263_7
Caenispirillum salinarum, Caenispirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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4174..4884
DNA (711bp) protein (237aa)
50S ribosomal protein L1 n=1 Tax=Caenispirillum salinarum AK4 RepID=K9H678_9PROT rbh
50S ribosomal protein L1 {ECO:0000256|HAMAP-Rule:MF_01318}; TaxID=1238182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Caenispirillum.;" source="Caenisp
50S ribosomal protein L1
13_1_20cm_3_scaffold_6263_8
Magnetospira sp. QH-2, Magnetospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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4976..5491
DNA (516bp) protein (172aa)
50S ribosomal protein L10 n=2 Tax=Magnetospirillum gryphiswaldense RepID=A4U4C8_9PROT
50S ribosomal protein L10 {ECO:0000256|HAMAP-Rule:MF_00362, ECO:0000256|RuleBase:RU003636}; TaxID=1288970 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; M
rplJ; 50S ribosomal subunit protein L10
13_1_20cm_3_scaffold_6263_9
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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5559..5936
DNA (378bp) protein (126aa)
50S ribosomal protein L7/L12 n=1 Tax=Oceanibaculum indicum P24 RepID=K2IYK6_9PROT
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Ocea
rplL; 50S ribosomal protein L7/L12
13_1_20cm_3_scaffold_6263_10
Magnetospirillum magneticum, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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6175..9780
DNA (3606bp) protein (1202aa)
DNA-directed RNA polymerase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000255|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000255|HAMAP-Rule:MF_01321};; RNA polymerase su
rpoB; DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta n=1 Tax=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) RepID=RPOB_MAGSA rbh
13_1_20cm_3_scaffold_6263_11
Xanthomonas hortorum, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(9626..9988)
DNA (363bp) protein (121aa)
Uncharacterized protein n=1 Tax=Xanthomonas hortorum pv. carotae str. M081 RepID=V7ZFZ2_9XANT
Uncharacterized protein {ECO:0000313|EMBL:ETC89470.1}; TaxID=863365 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas hortor
13_1_20cm_3_scaffold_6263_12
Magnetospirillum magnetotacticum, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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10398..14612
DNA (4215bp) protein (1405aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322, ECO:0000256|RuleB
DNA-directed RNA polymerase subunit beta' n=1 Tax=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) RepID=RPOC_MAGSA rbh
DNA-directed RNA polymerase, beta' subunit/160 kD subunit
13_1_20cm_3_scaffold_6263_13
RLO_Rhodospirillales_58_28, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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14609..14779
DNA (171bp) protein (57aa)
rpoC; DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta' n=1 Tax=Azospirillum amazonense Y2 RepID=G1XVC5_9PROT
rpoC; RNA polymerase, beta prime subunit Tax=RIFCSPLOWO2_12_FULL_Rhodospirillales_58_28_curated
13_1_20cm_3_scaffold_6263_14
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

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14921..15709
DNA (789bp) protein (263aa)
HpcH/HpaI aldolase n=1 Tax=alpha proteobacterium BAL199 RepID=A8TK79_9PROT
HpcH/HpaI aldolase Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
hpcH/HpaI aldolase/citrate lyase family protein
13_1_20cm_3_scaffold_6263_15
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(15711..17132)
DNA (1422bp) protein (474aa)
Amidohydrolase 3 n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HWK5_PARL1
amidohydrolase 3 Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
amidohydrolase 3
Displaying 16 items

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