ggKbase home page

13_1_20cm_3_scaffold_7939

Search features with annotation key words

Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_3_scaffold_7939_1
GWB2_Elusimicrobia_63_22_curated, Elusimicrobia, Bacteria

Not on your lists

1..915
DNA (915bp) protein (305aa)
peptidase C14 caspase catalytic subunit p20 Tax=GWB2_Elusimicrobia_63_22_curated
Tetratricopeptide repeat domain protein id=2148321 bin=GWB2_Elusimicrobium_63_22 species=Coleofasciculus chthonoplastes genus=Coleofasciculus taxon_order=Oscillatoriales taxon_class=unknown phylum=Cyanobacteria tax=GWB2_Elusimicrobium_63_22 organism_group=Elusimicrobia organism_desc=Good -
TPR repeat
13_1_20cm_3_scaffold_7939_2
unknown

Not on your lists

912..1772
DNA (861bp) protein (287aa)

This feature has no annotations

13_1_20cm_3_scaffold_7939_3
unknown

Not on your lists

1815..2378
DNA (564bp) protein (188aa)

This feature has no annotations

13_1_20cm_3_scaffold_7939_4
Desulfotomaculum ruminis, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2799..3269)
DNA (471bp) protein (157aa)
SsrA-binding protein n=1 Tax=Desulfotomaculum ruminis (strain ATCC 23193 / DSM 2154 / NCIB 8452 / DL) RepID=F6DNA1_DESRL
SsrA-binding protein {ECO:0000256|HAMAP-Rule:MF_00023, ECO:0000256|SAAS:SAAS00023472}; TaxID=696281 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfotomaculum.;" source
SsrA-binding protein
13_1_20cm_3_scaffold_7939_5
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3269..4135)
DNA (867bp) protein (289aa)
methionyl-tRNA formyltransferase (EC:2.1.2.9); K00604 methionyl-tRNA formyltransferase [EC:2.1.2.9] Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
fmt; methionyl-tRNA formyltransferase (EC:2.1.2.9)
Methionyl-tRNA formyltransferase id=1283665 bin=GWE1_Burkholderiales_65_30 species=unknown genus=Delftia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
13_1_20cm_3_scaffold_7939_6
RBG_16_Chloroflexi_57_8_curated, Chloroflexi, Bacteria

Not on your lists

comp(4158..4661)
DNA (504bp) protein (168aa)
peptide deformylase (EC:3.5.1.88); K01462 peptide deformylase [EC:3.5.1.88] Tax=RBG_16_Chloroflexi_57_8_curated
Peptide deformylase n=1 Tax=Dehalococcoides ethenogenes (strain 195) RepID=DEF_DEHE1
peptide deformylase
13_1_20cm_3_scaffold_7939_7
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(4673..6703)
DNA (2031bp) protein (677aa)
primosomal protein N'; K04066 primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:3.6.4.-] Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
Primosomal protein N n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C6Y1_SPHTD
primosomal protein N'
13_1_20cm_3_scaffold_7939_8
RBG_16_Chloroflexi_68_14_curated, Chloroflexi, Bacteria

Not on your lists

comp(6675..8372)
DNA (1698bp) protein (566aa)
phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase (EC:6.3.2.5); K13038 phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase [EC:4.1.1.36 6.3.2.5
bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase (EC:4.1.1.36 6.3.2.5)
Phosphopantothenate-cysteine ligase n=1 Tax=Moorella thermoacetica (strain ATCC 39073) RepID=Q2RK29_MOOTA
13_1_20cm_3_scaffold_7939_9
Chloroflexus aurantiacus, Chloroflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

comp(8377..9288)
DNA (912bp) protein (304aa)
Uncharacterized RNA pseudouridine synthase Caur_0901; EC=5.4.99.-;; RNA pseudouridylate synthase; RNA-uridine isomerase; TaxID=324602 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Chlo
RluA family pseudouridine synthase (EC:3.2.1.17)
Uncharacterized RNA pseudouridine synthase Caur_0901 n=2 Tax=Chloroflexus RepID=Y901_CHLAA
13_1_20cm_3_scaffold_7939_10
RBG_19FT_COMBO_Chloroflexi_62_14_curated, Chloroflexi, Bacteria

Not on your lists

comp(9285..9725)
DNA (441bp) protein (147aa)
lspA; lipoprotein signal peptidase (EC:3.4.23.36); K03101 signal peptidase II [EC:3.4.23.36] Tax=RBG_19FT_COMBO_Chloroflexi_62_14_curated
lspA; lipoprotein signal peptidase (EC:3.4.23.36); K03101 signal peptidase II [EC:3.4.23.36] id=1246543 bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
lipoprotein signal peptidase
13_1_20cm_3_scaffold_7939_11
Dehalococcoides mccartyi, Dehalococcoides, Dehalococcoidales, Dehalococcoidia, Chloroflexi, Bacteria

Not on your lists

comp(9755..12214)
DNA (2460bp) protein (820aa)
Isoleucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02003, ECO:0000256|SAAS:SAAS00106059}; EC=6.1.1.5 {ECO:0000256|HAMAP-Rule:MF_02003, ECO:0000256|SAAS:SAAS00106059};; Isoleucyl-tRNA synthetase {ECO:0
ileS; isoleucyl-tRNA synthetase (EC:6.1.1.5)
Isoleucyl-tRNA synthetase n=1 Tax=Dehalococcoides mccartyi GY50 RepID=V5QBL0_9CHLR
13_1_20cm_3_scaffold_7939_12
Nitrolancea hollandica, Nitrolancea, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

comp(12586..12840)
DNA (255bp) protein (85aa)
Uncharacterized protein n=1 Tax=Nitrolancetus hollandicus Lb RepID=I4EEG8_9CHLR
Uncharacterized protein {ECO:0000313|EMBL:CCF83080.1}; TaxID=1129897 species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Nitrolancea.;" source
hypothetical protein
13_1_20cm_3_scaffold_7939_13
Alicyclobacillus hesperidum, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(12850..13299)
DNA (450bp) protein (150aa)
Alanine racemase domain-containing protein {ECO:0000313|EMBL:EJY55812.1}; TaxID=1200346 species="Bacteria; Firmicutes; Bacilli; Bacillales; Alicyclobacillaceae; Alicyclobacillus.;" source="Alicyclobac
hypothetical protein; K06997 id=24441579 bin=RBG_19FT_COMBO_GAL15_69_19 species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
alanine racemase
Displaying 13 items

View Taxonomy