ggKbase home page

13_1_20cm_3_scaffold_10239

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_3_scaffold_10239_1
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

2..1345
DNA (1344bp) protein (448aa)
Anthranilate synthase component I {ECO:0000313|EMBL:BAH39458.1}; EC=4.1.3.27 {ECO:0000313|EMBL:BAH39458.1};; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemm
trpE; anthranilate synthase component I (EC:4.1.3.27)
Anthranilate synthase component I n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AB52_GEMAT
13_1_20cm_3_scaffold_10239_2
GWC2_Geobacteraceae_53_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1342..2097
DNA (756bp) protein (252aa)
hypothetical protein; K11211 3-deoxy-D-manno-octulosonic acid kinase [EC:2.7.1.166] Tax=GWC2_Geobacteraceae_53_11_curated
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AB54_GEMAT
lipopolysaccharide kinase
13_1_20cm_3_scaffold_10239_3
GWC2_Geobacteraceae_58_44_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2857..3093
DNA (237bp) protein (79aa)
putative glycosyltransferase (EC:2.4.-.-); K12982 heptosyltransferase I [EC:2.4.-.-] Tax=GWC2_Geobacteraceae_58_44_curated
Putative glycosyltransferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AB55_GEMAT
glycosyl transferase family 9
13_1_20cm_3_scaffold_10239_4
Pontibacter korlensis, Pontibacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

3090..3578
DNA (489bp) protein (163aa)
hypothetical protein n=1 Tax=Pontibacter roseus RepID=UPI0003820DF6
NUDIX hydrolase {ECO:0000313|EMBL:AKD03249.1}; TaxID=400092 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Pontibacter.;" source="Pontibacter korlensis.;"
NUDIX hydrolase
13_1_20cm_3_scaffold_10239_5
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(3561..4055)
DNA (495bp) protein (165aa)
Maf-like protein GAU_2420 n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AB56_GEMAT
Maf-like protein J421_3871 {ECO:0000256|HAMAP-Rule:MF_00528}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
Septum formation protein Maf
13_1_20cm_3_scaffold_10239_6
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(4160..4465)
DNA (306bp) protein (102aa)
D-aminoacyl-tRNA deacylase {ECO:0000256|HAMAP-Rule:MF_00518, ECO:0000256|SAAS:SAAS00160054}; EC=3.1.1.96 {ECO:0000256|HAMAP-Rule:MF_00518, ECO:0000256|SAAS:SAAS00160046};; TaxID=861299 species="Bacter
D-tyrosyl-tRNA(Tyr) deacylase n=1 Tax=Bacillus bataviensis LMG 21833 RepID=K6BZ47_9BACI
D-tyrosyl-tRNA(Tyr) deacylase
13_1_20cm_3_scaffold_10239_7
unknown

Not on your lists

4493..4639
DNA (147bp) protein (49aa)

This feature has no annotations

13_1_20cm_3_scaffold_10239_8
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(4600..5628)
DNA (1029bp) protein (343aa)
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] {ECO:0000256|HAMAP-Rule:MF_00164, ECO:0000256|SAAS:SAAS00039584}; EC=2.6.1.16 {ECO:0000256|HAMAP-Rule:MF_00164};; D-fructose-6-phosphate
glmS; glucosamine--fructose-6-phosphate aminotransferase (EC:2.6.1.16)
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AB63_GEMAT
13_1_20cm_3_scaffold_10239_9
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(5571..6374)
DNA (804bp) protein (268aa)
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] {ECO:0000256|HAMAP-Rule:MF_00164, ECO:0000256|SAAS:SAAS00039584}; EC=2.6.1.16 {ECO:0000256|HAMAP-Rule:MF_00164};; D-fructose-6-phosphate
glmS; glucosamine--fructose-6-phosphate aminotransferase (EC:2.6.1.16)
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AB63_GEMAT
13_1_20cm_3_scaffold_10239_10
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(6399..7772)
DNA (1374bp) protein (458aa)
Phosphoglucosamine mutase {ECO:0000313|EMBL:BAH39470.1}; EC=5.4.2.10 {ECO:0000313|EMBL:BAH39470.1};; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas
glmM; phosphoglucosamine mutase (EC:5.4.2.10)
Phosphoglucosamine mutase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AB64_GEMAT
13_1_20cm_3_scaffold_10239_11
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

7910..9079
DNA (1170bp) protein (390aa)
Cystathionine beta-lyase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AB67_GEMAT
Cys/Met metabolism pyridoxal-phosphate-dependent protein {ECO:0000313|EMBL:AHG91433.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
Cys/Met metabolism pyridoxal-phosphate-dependent protein
13_1_20cm_3_scaffold_10239_12
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

9076..10284
DNA (1209bp) protein (403aa)
Phosphoribosylamine--glycine ligase {ECO:0000256|HAMAP-Rule:MF_00138}; EC=6.3.4.13 {ECO:0000256|HAMAP-Rule:MF_00138};; GARS {ECO:0000256|HAMAP-Rule:MF_00138}; Glycinamide ribonucleotide synthetase {EC
Phosphoribosylamine--glycine ligase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AB69_GEMAT
Phosphoribosylamine--glycine ligase
13_1_20cm_3_scaffold_10239_13
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

10268..11095
DNA (828bp) protein (276aa)
Formamidopyrimidine-DNA glycosylase {ECO:0000256|SAAS:SAAS00020852}; EC=3.2.2.- {ECO:0000256|SAAS:SAAS00275239};; EC=3.2.2.23 {ECO:0000256|SAAS:SAAS00020832};; EC=4.2.99.18 {ECO:0000256|SAAS:SAAS00054
mutM; formamidopyrimidine-DNA glycosylase/AP lyase (EC:3.2.2.23 4.2.99.18)
Formamidopyrimidine-DNA glycosylase/AP lyase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AB70_GEMAT
13_1_20cm_3_scaffold_10239_14
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

11097..12197
DNA (1101bp) protein (367aa)
GIY-YIG catalytic domain-containing protein n=1 Tax=Myxococcus fulvus (strain ATCC BAA-855 / HW-1) RepID=F8CIG0_MYXFH
UvrB/UvrC protein {ECO:0000313|EMBL:AHG91437.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
UvrB/UvrC protein
13_1_20cm_3_scaffold_10239_15
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(12201..12806)
DNA (606bp) protein (202aa)
Aromatic acid decarboxylase {ECO:0000256|RuleBase:RU362054}; EC=4.1.1.- {ECO:0000256|RuleBase:RU362054};; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.
Aromatic acid decarboxylase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AB74_GEMAT
3-octaprenyl-4-hydroxybenzoate carboxy-lyase
13_1_20cm_3_scaffold_10239_16
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(12803..13702)
DNA (900bp) protein (300aa)
4-hydroxybenzoate octaprenyltransferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AB75_GEMAT
4-hydroxybenzoate polyprenyltransferase {ECO:0000313|EMBL:AHG91442.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
4-hydroxybenzoate polyprenyltransferase rbh
13_1_20cm_3_scaffold_10239_17
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(13710..15149)
DNA (1440bp) protein (480aa)
ubiD; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase (EC:4.1.1.-); K03182 3-octaprenyl-4-hydroxybenzoate carboxy-lyase UbiD [EC:4.1.1.-] Tax=GWC2_Gemmatimonadetes_71_10_curated
3-octaprenyl-4-hydroxybenzoate carboxy-lyase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AB76_GEMAT
menaquinone biosynthesis decarboxylase, SCO4490 family
13_1_20cm_3_scaffold_10239_18
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(15146..15916)
DNA (771bp) protein (257aa)
Demethylmenaquinone methyltransferase {ECO:0000256|HAMAP-Rule:MF_01813}; EC=2.1.1.163 {ECO:0000256|HAMAP-Rule:MF_01813};; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes b
Demethylmenaquinone methyltransferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AB77_GEMAT
Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
13_1_20cm_3_scaffold_10239_19
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

15978..16574
DNA (597bp) protein (199aa)
RNA polymerase sigma factor n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AB78_GEMAT
RNA polymerase ECF-type sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=RBG_16_Gemmatimonadetes_66_8_curated
RNA polymerase ECF-type sigma factor
13_1_20cm_3_scaffold_10239_20
unknown

Not on your lists

16711..16833
DNA (123bp) protein (41aa)

This feature has no annotations

Displaying 20 items

View Taxonomy