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13_1_20cm_3_scaffold_1195

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_3_scaffold_1195_1
Thermaerobacter subterraneus, Thermaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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1..345
DNA (345bp) protein (115aa)
Ribosome-binding factor A n=1 Tax=Thermaerobacter subterraneus DSM 13965 RepID=K6PY50_9FIRM
Ribosome-binding factor A {ECO:0000256|HAMAP-Rule:MF_00003, ECO:0000256|SAAS:SAAS00023386}; TaxID=867903 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae S
ribosome-binding factor A
13_1_20cm_3_scaffold_1195_2
RBG_16_Chloroflexi_68_14_curated, Chloroflexi, Bacteria

Not on your lists

368..2128
DNA (1761bp) protein (587aa)
truB; tRNA pseudouridine synthase B (EC:5.4.99.-); K03177 tRNA pseudouridine55 synthase [EC:5.4.99.25] Tax=RBG_16_Chloroflexi_68_14_curated
tRNA pseudouridine synthase B n=1 Tax=Cystobacter fuscus DSM 2262 RepID=S9R1U1_9DELT
tRNA pseudouridine synthase b
13_1_20cm_3_scaffold_1195_3
Desulfovibrio sp. 6_1_46AFAA, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

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2125..3051
DNA (927bp) protein (309aa)
Riboflavin biosynthesis protein {ECO:0000256|PIRNR:PIRNR004491}; EC=2.7.1.26 {ECO:0000256|PIRNR:PIRNR004491};; EC=2.7.7.2 {ECO:0000256|PIRNR:PIRNR004491};; TaxID=665942 species="Bacteria; Proteobacter
FMN adenylyltransferase; riboflavin kinase (EC:2.7.1.26 2.7.7.2)
Riboflavin biosynthesis protein RibF n=1 Tax=Desulfovibrio sp. 3_1_syn3 RepID=D9Y9B7_9DELT
13_1_20cm_3_scaffold_1195_4
unknown

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comp(3063..3236)
DNA (174bp) protein (58aa)

This feature has no annotations

13_1_20cm_3_scaffold_1195_5
Desulfosporosinus youngiae, Desulfosporosinus, Clostridiales, Clostridia, Firmicutes, Bacteria

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3357..3863
DNA (507bp) protein (169aa)
Uncharacterized protein n=1 Tax=Desulfosporosinus acidiphilus (strain DSM 22704 / JCM 16185 / SJ4) RepID=I4D7X8_DESAJ
Putative uncharacterized protein {ECO:0000313|EMBL:EHQ90042.1}; TaxID=768710 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfosporosinus.;" source="Desulfosporosinus yo
conserved protein of unknown function BmrU
13_1_20cm_3_scaffold_1195_6
Eubacterium sp. CAG:115, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3946..4218
DNA (273bp) protein (91aa)
30S ribosomal protein S15 n=1 Tax=Eubacterium sp. CAG:115 RepID=R5L7W3_9FIRM
30S ribosomal protein S15 {ECO:0000256|HAMAP-Rule:MF_01343, ECO:0000256|RuleBase:RU003920}; TaxID=1262878 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environ
SSU ribosomal protein S15P
13_1_20cm_3_scaffold_1195_7
Ktedonobacter racemifer, Ktedonobacter, Ktedonobacterales, Ktedonobacteria, Chloroflexi, Bacteria

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4393..6027
DNA (1635bp) protein (545aa)
Polyribonucleotide nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_01595}; EC=2.7.7.8 {ECO:0000256|HAMAP-Rule:MF_01595};; Polynucleotide phosphorylase {ECO:0000256|HAMAP-Rule:MF_01595}; TaxID=485913
polyribonucleotide nucleotidyltransferase (EC:2.7.7.8)
Polyribonucleotide nucleotidyltransferase n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TRT2_9CHLR
13_1_20cm_3_scaffold_1195_8
RBG_16_Chloroflexi_63_12_curated, Chloroflexi, Bacteria

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6024..6557
DNA (534bp) protein (178aa)
pnp; polyribonucleotide nucleotidyltransferase (EC:2.7.7.8); K00962 polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] Tax=RBG_16_Chloroflexi_63_12_curated
pnpA; polynucleotide phosphorylase/polyadenylase (EC:2.7.7.8)
Polyribonucleotide nucleotidyltransferase n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=PNP_SORC5
13_1_20cm_3_scaffold_1195_9

Not on your lists

6700..7137
DNA (438bp) protein (146aa)
uracil-DNA glycosylase (EC:3.2.2.-)
Uracil-DNA glycosylase n=1 Tax=Anaerolinea thermophila (strain DSM 14523 / JCM 11388 / NBRC 100420 / UNI-1) RepID=E8N338_ANATU
Uncharacterized protein {ECO:0000313|EMBL:KKL07560.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
13_1_20cm_3_scaffold_1195_10
Peptococcaceae bacterium BRH_c8a, Clostridiales, Clostridia, Firmicutes, Bacteria

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7193..8785
DNA (1593bp) protein (531aa)
RNA-metabolising metallo-beta-lactamase n=1 Tax=Syntrophothermus lipocalidus (strain DSM 12680 / TGB-C1) RepID=D7CM71_SYNLT
Ribonuclease J {ECO:0000313|EMBL:KJS11127.1}; TaxID=1629715 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae.;" source="Peptococcaceae bacterium BRH_c8a.;"
RNA-metabolising metallo-beta-lactamase
13_1_20cm_3_scaffold_1195_11
unknown

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8992..9210
DNA (219bp) protein (73aa)

This feature has no annotations

13_1_20cm_3_scaffold_1195_12
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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comp(9223..9639)
DNA (417bp) protein (139aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XPA8_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF58359.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedo
Ketosteroid isomerase-like protein
13_1_20cm_3_scaffold_1195_13
unknown

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comp(9650..10135)
DNA (486bp) protein (162aa)

This feature has no annotations

13_1_20cm_3_scaffold_1195_14
Carboxydothermus hydrogenoformans, Carboxydothermus, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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10303..12609
DNA (2307bp) protein (769aa)
DNA translocase FtsK n=1 Tax=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) RepID=Q3ACY0_CARHZ
DNA translocase FtsK {ECO:0000313|EMBL:ABB14178.1}; TaxID=246194 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Carboxydothermus.;" source="Carboxydothermu
DNA translocase FtsK
13_1_20cm_3_scaffold_1195_15
Alicyclobacillus hesperidum, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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12763..13254
DNA (492bp) protein (164aa)
UPF0234 protein URH17368_2356 n=1 Tax=Alicyclobacillus hesperidum URH17-3-68 RepID=J9HCJ6_9BACL
UPF0234 protein URH17368_2356 {ECO:0000256|HAMAP-Rule:MF_00632}; TaxID=1200346 species="Bacteria; Firmicutes; Bacilli; Bacillales; Alicyclobacillaceae; Alicyclobacillus.;" source="Alicyclobacillus hes
hypothetical protein
13_1_20cm_3_scaffold_1195_16
RBG_16_RIF_CHLX_69_14_curated, RIF-CHLX, Bacteria

Not on your lists

13258..13743
DNA (486bp) protein (162aa)
CinA domain protein n=1 Tax=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) RepID=B8DP26_DESVM
CinA domain-containing protein; K03742 competence/damage-inducible protein CinA Tax=RBG_16_RIF_CHLX_69_14_curated
damage inducible protein CinA
13_1_20cm_3_scaffold_1195_17
Firmicutes bacterium CAG:145, Firmicutes, Bacteria

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13818..14822
DNA (1005bp) protein (335aa)
Protein RecA n=1 Tax=Firmicutes bacterium CAG:145 RepID=R6EP80_9FIRM
Protein RecA {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; Recombinase A {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; TaxID=1263005 species="Bacteria; Firmicut
recA protein
13_1_20cm_3_scaffold_1195_18
Actinokineospora spheciospongiae, Actinokineospora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14819..15358
DNA (540bp) protein (180aa)
hypothetical protein n=1 Tax=Paenibacillus ginsengihumi RepID=UPI0003660ACA
Regulatory protein RecX {ECO:0000256|HAMAP-Rule:MF_01114, ECO:0000256|SAAS:SAAS00093789}; TaxID=909613 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Actinokineospora.;" sou
regulatory protein RecX
13_1_20cm_3_scaffold_1195_19
Paenibacillus darwinianus, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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15453..16985
DNA (1533bp) protein (511aa)
Ribonuclease Y {ECO:0000256|HAMAP-Rule:MF_00335}; Short=RNase Y {ECO:0000256|HAMAP-Rule:MF_00335};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00335};; TaxID=1380763 species="Bacteria; Firmicutes; Bacilli;
Ribonuclease Y n=1 Tax=Thermobacillus composti (strain DSM 18247 / JCM 13945 / KWC4) RepID=L0EEN1_THECK rbh
hypothetical protein
13_1_20cm_3_scaffold_1195_20
unknown

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17072..17281
DNA (210bp) protein (70aa)

This feature has no annotations

Displaying 20 items

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