ggKbase home page

13_1_20cm_3_scaffold_1889

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_3_scaffold_1889_1
Megasphaera elsdenii, Megasphaera, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

1..606
DNA (606bp) protein (202aa)
R3H domain protein n=1 Tax=Megasphaera elsdenii CAG:570 RepID=R7MZ87_9FIRM
R3H domain protein {ECO:0000313|EMBL:CCC72730.1}; TaxID=1064535 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megasphaera.;" source="Megasphaera elsdenii DSM 20460.;"
R3H domain protein
13_1_20cm_3_scaffold_1889_2
unknown

Not on your lists

comp(516..869)
DNA (354bp) protein (118aa)

This feature has no annotations

13_1_20cm_3_scaffold_1889_3
RBG_13_Chloroflexi_52_14_curated, Chloroflexi, Bacteria

Not on your lists

1020..2246
DNA (1227bp) protein (409aa)
hypothetical protein n=1 Tax=Chloroflexi bacterium SCGC AB-629-P13 RepID=UPI00038125DA
peptidase M16 domain-containing protein Tax=RBG_13_Chloroflexi_52_14_curated
processing protease
13_1_20cm_3_scaffold_1889_4
GWB1_OP11_41_10, Woesebacteria, Microgenomates, Bacteria

Not on your lists

2334..2918
DNA (585bp) protein (195aa)
signal peptidase I (EC:3.4.21.89)
Signal peptidase I n=1 Tax=Desulfotomaculum hydrothermale Lam5 = DSM 18033 RepID=K8DZH1_9FIRM
Signal peptidase I {ECO:0000313|EMBL:KKR86966.1}; TaxID=1618577 species="Bacteria; Microgenomates.;" source="Microgenomates (Woesebacteria) bacterium GW2011_GWB1_41_10.;"
13_1_20cm_3_scaffold_1889_5
Carboxydothermus hydrogenoformans, Carboxydothermus, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

2923..3372
DNA (450bp) protein (150aa)
Nucleoside diphosphate kinase {ECO:0000255|HAMAP-Rule:MF_00451}; Short=NDK {ECO:0000255|HAMAP-Rule:MF_00451};; Short=NDP kinase {ECO:0000255|HAMAP-Rule:MF_00451};; EC=2.7.4.6 {ECO:0000255|HAMAP-Rule:M
ndk; nucleoside diphosphate kinase (EC:2.7.4.6)
Nucleoside diphosphate kinase n=1 Tax=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) RepID=NDK_CARHZ
13_1_20cm_3_scaffold_1889_6
RBG_16_Gammaproteobacteria_66_13_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3390..4274)
DNA (885bp) protein (295aa)
parB; chromosome partitioning protein ParB; K03497 chromosome partitioning protein, ParB family Tax=RBG_16_Gammaproteobacteria_66_13_curated
parB; chromosome partitioning protein id=14429229 bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
parB; chromosome partitioning protein ParB
13_1_20cm_3_scaffold_1889_7
Moorella thermoacetica, Moorella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4271..4963)
DNA (693bp) protein (231aa)
Chromosome segregation ATPase n=1 Tax=Moorella thermoacetica (strain ATCC 39073) RepID=Q2RFJ1_MOOTA
Chromosome segregation ATPase {ECO:0000313|EMBL:ABC20798.1}; TaxID=264732 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Moorella group; Moorella.;" source
chromosome segregation ATPase
13_1_20cm_3_scaffold_1889_8
Caldilinea aerophila, Caldilinea, Caldilineales, Caldilineae, Chloroflexi, Bacteria

Not on your lists

comp(5052..5957)
DNA (906bp) protein (302aa)
Uncharacterized protein n=1 Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I6U4_CALAS
Uncharacterized protein {ECO:0000313|EMBL:BAM00982.1}; TaxID=926550 species="Bacteria; Chloroflexi; Caldilineae; Caldilineales; Caldilineaceae; Caldilinea.;" source="Caldilinea aerophila (strain DSM 1
hypothetical protein
13_1_20cm_3_scaffold_1889_9
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

comp(6035..6832)
DNA (798bp) protein (266aa)
Band 7 protein n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C4X2_SPHTD
Band 7 protein {ECO:0000313|EMBL:ACZ39289.1}; TaxID=479434 species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Sphaerobacter.;" source="Sphaer
hypothetical protein
13_1_20cm_3_scaffold_1889_10
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

comp(6876..8060)
DNA (1185bp) protein (395aa)
Uncharacterized protein n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C4X1_SPHTD
Uncharacterized protein {ECO:0000313|EMBL:ACZ39288.1}; Flags: Precursor;; TaxID=479434 species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Sph
hypothetical protein
13_1_20cm_3_scaffold_1889_11
unknown

Not on your lists

comp(8069..8203)
DNA (135bp) protein (45aa)

This feature has no annotations

13_1_20cm_3_scaffold_1889_12
Synechococcus sp. JA-2-3B'a(2-13), Synechococcus, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

8254..8856
DNA (603bp) protein (201aa)
RNA polymerase sigma factor n=1 Tax=Synechococcus sp. (strain JA-2-3B'a(2-13)) RepID=Q2JLG8_SYNJB
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=321332 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus.;" source="Synechococcus sp. (strain JA-
sigma-70 family RNA polymerase sigma factor
13_1_20cm_3_scaffold_1889_13
Anaeromyxobacter sp. Fw109-5, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8860..9972
DNA (1113bp) protein (371aa)
Aminomethyltransferase {ECO:0000256|HAMAP-Rule:MF_00259, ECO:0000256|RuleBase:RU003981}; EC=2.1.2.10 {ECO:0000256|HAMAP-Rule:MF_00259, ECO:0000256|RuleBase:RU003981};; Glycine cleavage system T protei
Aminomethyltransferase n=1 Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7HDC7_ANADF
gcvT; glycine cleavage system aminomethyltransferase T
13_1_20cm_3_scaffold_1889_14
RBG_13_Aminicenantes_59_9_curated, Aminicenantes, Bacteria

Not on your lists

9989..10375
DNA (387bp) protein (129aa)
glycine cleavage system protein H n=1 Tax=Halomonas lutea RepID=UPI00036D920E
glycine cleavage system H protein; K02437 glycine cleavage system H protein Tax=RBG_13_Aminicenantes_59_9_curated
gcvH; Glycine cleavage system H protein
13_1_20cm_3_scaffold_1889_15
RIFOXYC12_FULL_TA06_54_24_curated, TA06, Bacteria

Not on your lists

10372..11703
DNA (1332bp) protein (444aa)
glycine dehydrogenase subunit 1 (EC:1.4.4.2); K00282 glycine dehydrogenase subunit 1 [EC:1.4.4.2] Tax=RIFOXYC12_FULL_TA06_54_24_curated
glycine dehydrogenase; K00282 glycine dehydrogenase subunit 1 [EC:1.4.4.2] id=7200503 bin=TA06_GWE2_final species=TA06 genus=TA06 taxon_order=TA06 taxon_class=TA06 phylum=TA06 tax=TA06_GWE2_final organism_group=TA06 rbh
glycine dehydrogenase subunit 1 (EC:1.4.4.2)
13_1_20cm_3_scaffold_1889_16
Peptococcaceae bacterium BRH_c4a, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11700..11906
DNA (207bp) protein (69aa)
Probable glycine dehydrogenase (decarboxylating) subunit 2 {ECO:0000256|HAMAP-Rule:MF_00713}; EC=1.4.4.2 {ECO:0000256|HAMAP-Rule:MF_00713};; Glycine cleavage system P-protein subunit 2 {ECO:0000256|HA
Probable glycine dehydrogenase (decarboxylating) subunit 2 n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F1K7_CONWI
13_1_20cm_3_scaffold_1889_17
Alicyclobacillus acidocaldarius, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

11965..12786
DNA (822bp) protein (274aa)
Probable glycine dehydrogenase (decarboxylating) subunit 2 {ECO:0000256|HAMAP-Rule:MF_00713}; EC=1.4.4.2 {ECO:0000256|HAMAP-Rule:MF_00713};; Glycine cleavage system P-protein subunit 2 {ECO:0000256|HA
glycine dehydrogenase subunit 2 (EC:1.4.4.2)
Probable glycine dehydrogenase (decarboxylating) subunit 2 n=1 Tax=Alicyclobacillus acidocaldarius subsp. acidocaldarius (strain ATCC 27009 / DSM 446 / 104-1A) RepID=C8WXI9_ALIAD
Displaying 17 items

View Taxonomy