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13_1_20cm_3_scaffold_1896

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_3_scaffold_1896_trna_1
unknown

Not on your lists

comp(122..192)
DNA (71bp)
transferRNA
13_1_20cm_3_scaffold_1896_1
unknown

Not on your lists

comp(435..803)
DNA (369bp) protein (123aa)

This feature has no annotations

13_1_20cm_3_scaffold_1896_2
RBG_16_Zixibacteria_48_11_curated, Zixibacteria, Bacteria

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comp(808..1620)
DNA (813bp) protein (271aa)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC:2.7.1.148); K00919 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148] Tax=RBG_16_Zixibacteria_48_11_curated
ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC:2.7.1.148)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase n=1 Tax=Gordonia soli NBRC 108243 RepID=M0QJ15_9ACTO
13_1_20cm_3_scaffold_1896_3
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

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comp(1617..2393)
DNA (777bp) protein (259aa)
Ribosomal RNA small subunit methyltransferase A {ECO:0000255|HAMAP-Rule:MF_00607}; EC=2.1.1.182 {ECO:0000255|HAMAP-Rule:MF_00607};; 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase
dimethyladenosine transferase (EC:2.1.1.-)
dimethyladenosine transferase n=1 Tax=Patulibacter americanus RepID=UPI0003B5FCA5
13_1_20cm_3_scaffold_1896_4
Nitrospina gracilis, Nitrospina, Nitrospinales, Nitrospinia, Nitrospinae, Bacteria

Not on your lists

comp(2390..3133)
DNA (744bp) protein (248aa)
Uncharacterized protein n=1 Tax=Nitrospina gracilis 3/211 RepID=M1Z294_9BACT
Uncharacterized protein {ECO:0000313|EMBL:CCQ91851.1}; TaxID=1266370 species="Bacteria; Nitrospinae; Nitrospinia; Nitrospinales; Nitrospinaceae; Nitrospina.;" source="Nitrospina gracilis (strain 3/211
TatD family hydrolase
13_1_20cm_3_scaffold_1896_5
Chloroflexus aggregans, Chloroflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

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comp(3130..4839)
DNA (1710bp) protein (570aa)
Methionine--tRNA ligase {ECO:0000255|HAMAP-Rule:MF_00098}; EC=6.1.1.10 {ECO:0000255|HAMAP-Rule:MF_00098};; Methionyl-tRNA synthetase {ECO:0000255|HAMAP-Rule:MF_00098}; Short=MetRS {ECO:0000255|HAMAP-R
Methionine--tRNA ligase n=1 Tax=Chloroflexus aggregans (strain MD-66 / DSM 9485) RepID=SYM_CHLAD
methionyl-tRNA synthetase
13_1_20cm_3_scaffold_1896_6
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

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comp(4788..5873)
DNA (1086bp) protein (362aa)
peptidase M23B (EC:3.4.24.-) Tax=RBG_16_Actinobacteria_68_12_curated
hypothetical protein n=1 Tax=Leucobacter sp. UCD-THU RepID=UPI000374685D
M23B-like peptidase
13_1_20cm_3_scaffold_1896_7
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

comp(5947..6498)
DNA (552bp) protein (184aa)
uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; K07056 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] Tax=RBG_16_Actinobacteria_68_12_curated
Ribosomal RNA small subunit methyltransferase I n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3FEH7_CONWI
uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase
13_1_20cm_3_scaffold_1896_8
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

comp(6680..7576)
DNA (897bp) protein (299aa)
ROK family protein; K00845 glucokinase [EC:2.7.1.2] Tax=RBG_16_Actinobacteria_68_12_curated
ROK family protein n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3FEH8_CONWI
ROK family protein
13_1_20cm_3_scaffold_1896_9
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

7602..8486
DNA (885bp) protein (295aa)
Cell envelope-related transcriptional attenuator n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3FEH9_CONWI
cell envelope-like transcriptional attenuator Tax=RBG_16_Actinobacteria_68_12_curated
cell envelope-related transcriptional attenuator
13_1_20cm_3_scaffold_1896_10
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

8483..8737
DNA (255bp) protein (85aa)
cell envelope-like transcriptional attenuator Tax=RBG_16_Actinobacteria_68_12_curated
13_1_20cm_3_scaffold_1896_11
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

comp(8745..9035)
DNA (291bp) protein (97aa)
Putative regulatory protein, FmdB n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AX18_RUBXD
FmdB transcriptional regulator Tax=RBG_16_Actinobacteria_68_12_curated
FmdB transcriptional regulator
13_1_20cm_3_scaffold_1896_12
Geodermatophilus obscurus, Geodermatophilus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9039..9878
DNA (840bp) protein (280aa)
Membrane protein-like protein n=1 Tax=Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 / G-20) RepID=D2S410_GEOOG
Membrane protein-like protein {ECO:0000313|EMBL:ADB73038.1}; TaxID=526225 species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Geodermatophilus.;" source="Geodermatophilus obscu
hypothetical protein
13_1_20cm_3_scaffold_1896_13
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

9830..10510
DNA (681bp) protein (227aa)
Tax=RBG_16_Actinobacteria_68_12_curated
13_1_20cm_3_scaffold_1896_14
unknown

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comp(10499..10702)
DNA (204bp) protein (68aa)

This feature has no annotations

13_1_20cm_3_scaffold_1896_15
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

10724..11530
DNA (807bp) protein (269aa)
sugar kinase (EC:2.7.1.15)
2-keto-3-deoxygluconate kinase, KdgK Tax=RBG_16_Actinobacteria_68_12_curated
PfkB domain-containing protein id=14628771 bin=bin8_Chloro species=Catenulispora acidiphila genus=Catenulispora taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin8_Chloro organism_group=Chloroflexi
13_1_20cm_3_scaffold_1896_16
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

11527..12402
DNA (876bp) protein (292aa)
hypothetical protein n=1 Tax=Terracoccus sp. 273MFTsu3.1 RepID=UPI00036B7650
indigoidine synthase Tax=RBG_16_Actinobacteria_68_12_curated
pigment biosynthesis protein
13_1_20cm_3_scaffold_1896_17
Deinococcus phoenicis, Deinococcus, Deinococcales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

comp(12602..13453)
DNA (852bp) protein (284aa)
hypothetical protein n=1 Tax=Desulfurispora thermophila RepID=UPI00036B6950
Uncharacterized protein {ECO:0000313|EMBL:EYB67592.1}; TaxID=1476583 species="Bacteria; Deinococcus-Thermus; Deinococci; Deinococcales; Deinococcaceae; Deinococcus.;" source="Deinococcus phoenicis.;"
hypothetical protein
13_1_20cm_3_scaffold_1896_18
Actinoplanes utahensis, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13450..14292)
DNA (843bp) protein (281aa)
ABC transporter related protein n=1 Tax=Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 / G-20) RepID=D2SC46_GEOOG
ABC transporter {ECO:0000313|EMBL:KHD75735.1}; TaxID=1869 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes utahensis.;"
ABC transporter
13_1_20cm_3_scaffold_1896_19
unknown

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14317..14559
DNA (243bp) protein (81aa)

This feature has no annotations

13_1_20cm_3_scaffold_1896_20
unknown

Not on your lists

14644..14808
DNA (165bp) protein (55aa)

This feature has no annotations

13_1_20cm_3_scaffold_1896_21

Not on your lists

comp(14805..15062)
DNA (258bp) protein (86aa)
Hypothetical conserved protein n=1 Tax=uncultured prokaryote RepID=H5S8V3_9ZZZZ
Hypothetical conserved protein {ECO:0000313|EMBL:BAL52589.1}; TaxID=198431 species="unclassified sequences; environmental samples.;" source="uncultured prokaryote.;"
GYD domain superfamily
13_1_20cm_3_scaffold_1896_22
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

comp(15022..15723)
DNA (702bp) protein (234aa)
Tax=RBG_16_Actinobacteria_68_12_curated
13_1_20cm_3_scaffold_1896_23
Ktedonobacter racemifer, Ktedonobacter, Ktedonobacterales, Ktedonobacteria, Chloroflexi, Bacteria

Not on your lists

comp(15788..16576)
DNA (789bp) protein (263aa)
Uncharacterized protein n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TJX4_9CHLR
Uncharacterized protein {ECO:0000313|EMBL:EFH89731.1}; Flags: Precursor;; TaxID=485913 species="Bacteria; Chloroflexi; Ktedonobacteria; Ktedonobacterales; Ktedonobacteraceae; Ktedonobacter.;" source="
13_1_20cm_3_scaffold_1896_24
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

comp(16585..17160)
DNA (576bp) protein (192aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ADJ6_GEMAT
hypothetical protein Tax=RBG_16_Actinobacteria_68_12_curated
hypothetical protein
Displaying 25 items

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