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13_1_20cm_3_scaffold_25540

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_3_scaffold_25540_1
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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comp(3..512)
DNA (510bp) protein (170aa)
Heme exporter protein CcmC n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AA41_GEMAT
heme exporter protein C; K02195 heme exporter protein C Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
cytochrome c assembly protein
13_1_20cm_3_scaffold_25540_2
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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comp(509..1189)
DNA (681bp) protein (227aa)
Heme exporter protein CcmB n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AA42_GEMAT
ccmB; heme exporter protein CcmB; K02194 heme exporter protein B Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
cytochrome c-type biogenesis protein CcmB
13_1_20cm_3_scaffold_25540_3
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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comp(1182..1901)
DNA (720bp) protein (240aa)
ABC-type transport system ATP-binding protein (Probable substrate heme) n=1 Tax=Natronomonas pharaonis (strain ATCC 35678 / DSM 2160) RepID=Q3IRY1_NATPD
heme ABC exporter, ATP-binding protein CcmA; K09687 antibiotic transport system ATP-binding protein Tax=GWC2_Gemmatimonadetes_71_10_curated
abc29a; ABC-type transport system ATP-binding protein
13_1_20cm_3_scaffold_25540_4
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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comp(1888..2262)
DNA (375bp) protein (125aa)
Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfotomaculum reducens (strain MI-1) RepID=A4J443_DESRM
two-component response regulator protein; K15012 two-component system, response regulator RegA Tax=RBG_16_Gemmatimonadetes_66_8_curated
two-component systen response regulator
13_1_20cm_3_scaffold_25540_5
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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comp(2307..2618)
DNA (312bp) protein (104aa)
STAS domain protein n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RSZ4_9PROT
Tax=GWC2_Gemmatimonadetes_71_10_curated
13_1_20cm_3_scaffold_25540_6
RLO_PLX_64_10, Bacteria

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2893..5001
DNA (2109bp) protein (703aa)
acetate--CoA ligase Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
Acetyl-coenzyme A synthetase id=4380013 bin=GWA2_Methylomirabilis_73_35 species=Acidothermus cellulolyticus genus=Acidothermus taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
AMP-dependent synthetase and ligase
13_1_20cm_3_scaffold_25540_7
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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comp(5005..6909)
DNA (1905bp) protein (635aa)
Probable potassium transport system protein kup n=1 Tax=Myxococcus sp. (contaminant ex DSM 436) RepID=U2SH89_9DELT rbh
kup; potassium uptake protein; K03549 KUP system potassium uptake protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
potassium uptake protein
13_1_20cm_3_scaffold_25540_8
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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comp(7292..7948)
DNA (657bp) protein (219aa)
DSBA oxidoreductase n=1 Tax=Nitrosopumilus maritimus (strain SCM1) RepID=A9A5N9_NITMS id=5103511 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
putative oxidoreductase Tax=RBG_16_Gemmatimonadetes_66_8_curated
putative oxidoreductase
13_1_20cm_3_scaffold_25540_9
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(7945..8262)
DNA (318bp) protein (106aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
hypothetical protein
13_1_20cm_3_scaffold_25540_10
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

8468..8737
DNA (270bp) protein (90aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AA48_GEMAT
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
hypothetical protein
13_1_20cm_3_scaffold_25540_11
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(9167..9577)
DNA (411bp) protein (137aa)
OsmC family protein n=1 Tax=Oscillochloris trichoides DG-6 RepID=E1IEP3_9CHLR
OsmC-like protein; K07397 putative redox protein Tax=GWC2_Gemmatimonadetes_71_10_curated
yhfA; OsmC-like protein YhfA
13_1_20cm_3_scaffold_25540_12
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(9579..10106)
DNA (528bp) protein (176aa)
Tax=RBG_16_Gemmatimonadetes_66_8_curated
13_1_20cm_3_scaffold_25540_13
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(10106..10564)
DNA (459bp) protein (153aa)
pgsA2; CDP-alcohol phosphatidyltransferase; K00995 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5] Tax=RBG_16_Gemmatimonadetes_66_8_curated
CDP-alcohol phosphatidyltransferase family protein n=1 Tax=Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) RepID=H8MUZ5_CORCM
CDP-alcohol phosphatidyltransferase
13_1_20cm_3_scaffold_25540_14
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

10608..11054
DNA (447bp) protein (149aa)
Cyclic nucleotide-binding domain-containing protein n=1 Tax=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8) RepID=L7U7L7_MYXSD
cyclic nucleotide-binding domain-containing protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
cyclic nucleotide-binding domain-containing protein
13_1_20cm_3_scaffold_25540_15
Planktothrix agardhii, Planktothrix, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

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11185..11547
DNA (363bp) protein (121aa)
S-adenosylmethionine decarboxylase proenzyme {ECO:0000256|HAMAP-Rule:MF_00464}; Short=AdoMetDC {ECO:0000256|HAMAP-Rule:MF_00464};; Short=SAMDC {ECO:0000256|HAMAP-Rule:MF_00464};; EC=4.1.1.50 {ECO:0000
13_1_20cm_3_scaffold_25540_16
unknown

Not on your lists

comp(11627..11794)
DNA (168bp) protein (56aa)

This feature has no annotations

13_1_20cm_3_scaffold_25540_17
unknown

Not on your lists

12165..12821
DNA (657bp) protein (219aa)

This feature has no annotations

Displaying 17 items

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