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13_1_20cm_3_scaffold_267

Search features with annotation key words

Displaying items 1-30 of 39 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_3_scaffold_267_1
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

comp(1..1053)
DNA (1053bp) protein (351aa)
RNA polymerase sigma 70 n=1 Tax=Patulibacter americanus RepID=UPI0003B5C1FE
RpoD subfamily RNA polymerase sigma-70 subunit; K03086 RNA polymerase primary sigma factor Tax=RBG_16_Actinobacteria_68_12_curated
RpoD subfamily RNA polymerase sigma-70 subunit
13_1_20cm_3_scaffold_267_2
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

comp(1180..3510)
DNA (2331bp) protein (777aa)
DNA topoisomerase {ECO:0000256|SAAS:SAAS00046608}; EC=5.99.1.2 {ECO:0000256|SAAS:SAAS00046608};; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae
DNA topoisomerase III n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F254_CONWI
DNA topoisomerase III
13_1_20cm_3_scaffold_267_3
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

3566..4159
DNA (594bp) protein (198aa)
1-acyl-sn-glycerol-3-phosphate acyltransferase n=1 Tax=Paenibacillus massiliensis RepID=UPI00037ACEFD
1-acyl-sn-glycerol-3-phosphate acyltransferase Tax=RBG_16_Actinobacteria_68_12_curated
1-acyl-sn-glycerol-3-phosphate acyltransferase
13_1_20cm_3_scaffold_267_4
unknown

Not on your lists

comp(4171..5028)
DNA (858bp) protein (286aa)

This feature has no annotations

13_1_20cm_3_scaffold_267_5
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

5058..5906
DNA (849bp) protein (283aa)
hypothetical protein n=1 Tax=actinobacterium SCGC AAA044-N04 RepID=UPI00036C7851
5'-3' exonuclease Tax=RBG_16_Actinobacteria_68_12_curated
DNA polymerase I
13_1_20cm_3_scaffold_267_6
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

5924..6748
DNA (825bp) protein (275aa)
histone deacetylase superfamily protein Tax=RBG_16_Actinobacteria_68_12_curated
Putative Deacetylase, histone deacetylase family id=4285543 bin=GWA2_Deltaproteo_65_63 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWA2_Deltaproteo_65_63 organism_group=Deltaproteobacteria
histone deacetylase superfamily
13_1_20cm_3_scaffold_267_7
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

comp(6762..7412)
DNA (651bp) protein (217aa)
Putative two-component system response regulator n=1 Tax=Nocardia farcinica (strain IFM 10152) RepID=Q5YV23_NOCFA
two component transcriptional regulator, LuxR family Tax=RBG_16_Actinobacteria_68_12_curated
two-component system response regulator
13_1_20cm_3_scaffold_267_8
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

7457..8827
DNA (1371bp) protein (457aa)
GAF sensor signal transduction histidine kinase (EC:2.7.13.3) Tax=RBG_16_Actinobacteria_68_12_curated
Membrane protein n=1 Tax=Arthrobacter sp. SJCon RepID=L8TTG8_9MICC
histidine kinase
13_1_20cm_3_scaffold_267_9
Terrabacter sp. 28, Terrabacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8871..9590
DNA (720bp) protein (240aa)
acetyltransferase n=1 Tax=Streptomyces acidiscabies RepID=UPI000288CF10
Uncharacterized protein {ECO:0000313|EMBL:KJK13677.1}; TaxID=1619947 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Terrabacter.;" source="Terrabacter sp. 28.;"
N-acetyltransferase GCN5
13_1_20cm_3_scaffold_267_10
Streptosporangium roseum, Streptosporangium, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9568..10194)
DNA (627bp) protein (209aa)
Uncharacterized protein n=1 Tax=Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 / NI 9100) RepID=D2B5Q0_STRRD
Uncharacterized protein {ECO:0000313|EMBL:ACZ91354.1}; TaxID=479432 species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Streptosporangium.;" source="Streptosporangium roseum
hypothetical protein
13_1_20cm_3_scaffold_267_11
Arthrobacter nitrophenolicus, Arthrobacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10344..11312)
DNA (969bp) protein (323aa)
endoglucanase, glycosyl hydrolase family 26 (EC:3.2.1.-)
Glycoside hydrolase family protein n=1 Tax=Arthrobacter sp. SJCon RepID=L8TUK1_9MICC
Glycoside hydrolase family protein {ECO:0000313|EMBL:ELT45426.1}; TaxID=683150 species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Arthrobacter.;" source="Arthrobacter nitrophenolicus.;"
13_1_20cm_3_scaffold_267_12
Cellvibrio mixtus, Cellvibrio, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11382..12611)
DNA (1230bp) protein (410aa)
Endo-beta-1,4-xylanase {ECO:0000313|EMBL:CAA88761.1}; EC=3.2.1.8 {ECO:0000313|EMBL:CAA88761.1};; Flags: Precursor;; TaxID=39650 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales;
xyn11A; endo-1,4-beta-xylanase (EC:3.1.1.72 3.2.1.8)
Endo-beta-1,4-xylanase n=1 Tax=Cellvibrio mixtus RepID=Q59300_9GAMM
13_1_20cm_3_scaffold_267_13
Mycobacterium smegmatis, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12637..13938)
DNA (1302bp) protein (434aa)
Glycosyl transferase n=1 Tax=Mycobacterium smegmatis JS623 RepID=L0J0E8_MYCSM rbh
Glycosyl transferase {ECO:0000313|EMBL:AGB24293.1}; Flags: Precursor;; TaxID=710686 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium smegm
glycosyl transferase
13_1_20cm_3_scaffold_267_14
unknown

Not on your lists

comp(13928..14110)
DNA (183bp) protein (61aa)

This feature has no annotations

13_1_20cm_3_scaffold_267_15
RBG_16_Acidobacteria_64_8_curated, Acidobacteria, Bacteria

Not on your lists

comp(14259..15518)
DNA (1260bp) protein (420aa)
hypothetical protein n=1 Tax=Actinopolymorpha alba RepID=UPI000372BE99
integral membrane sensor signal transduction histidine kinase Tax=RBG_16_Acidobacteria_64_8_curated
integral membrane sensor signal transduction histidine kinase
13_1_20cm_3_scaffold_267_16
RBG_16_Acidobacteria_64_8_curated, Acidobacteria, Bacteria

Not on your lists

comp(15515..16030)
DNA (516bp) protein (172aa)
hypothetical protein n=1 Tax=Streptomyces scabrisporus RepID=UPI00036B1EE2
winged helix family two component transcriptional regulator Tax=RBG_16_Acidobacteria_64_8_curated
winged helix family two component transcriptional regulator
13_1_20cm_3_scaffold_267_17
unknown

Not on your lists

16391..16678
DNA (288bp) protein (96aa)

This feature has no annotations

13_1_20cm_3_scaffold_267_18
unknown

Not on your lists

17671..18678
DNA (1008bp) protein (336aa)

This feature has no annotations

13_1_20cm_3_scaffold_267_19
Desulfurivibrio alkaliphilus, Desulfurivibrio, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18642..19343)
DNA (702bp) protein (234aa)
ABC transporter related protein n=1 Tax=Desulfurivibrio alkaliphilus (strain DSM 19089 / UNIQEM U267 / AHT2) RepID=D6Z471_DESAT
ABC transporter related protein {ECO:0000313|EMBL:ADH86346.1}; TaxID=589865 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobulbaceae; Desulfurivibrio.;" source="Desu
ABC transporter related protein
13_1_20cm_3_scaffold_267_20
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

comp(19340..20056)
DNA (717bp) protein (239aa)
hypothetical protein n=1 Tax=Chloroflexi bacterium SCGC AB-629-P13 RepID=UPI000370AB83
ABC transporter; K02003 putative ABC transport system ATP-binding protein Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
lolD-2; lipoprotein release ABC transporter ATP-binding protein
13_1_20cm_3_scaffold_267_21
Streptomyces violaceusniger, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20047..20667)
DNA (621bp) protein (207aa)
Lipoprotein n=1 Tax=Streptomyces violaceusniger Tu 4113 RepID=G2P537_STRVO
Lipoprotein {ECO:0000313|EMBL:AEM84429.1}; Flags: Precursor;; TaxID=653045 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces violaceusniger T
lipoprotein
13_1_20cm_3_scaffold_267_22
Bacillus cereus, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

20754..22001
DNA (1248bp) protein (416aa)
hypothetical protein n=1 Tax=Actinopolymorpha alba RepID=UPI000374138E
Uncharacterized protein {ECO:0000313|EMBL:EJR54346.1}; TaxID=1053229 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus cereus group.;" source="Bacillus cereus VD107.;
integral membrane protein
13_1_20cm_3_scaffold_267_23
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

comp(22274..22477)
DNA (204bp) protein (68aa)
Tax=RBG_16_Actinobacteria_68_12_curated
13_1_20cm_3_scaffold_267_24
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

comp(22474..23085)
DNA (612bp) protein (204aa)
LexA family transcriptional repressor (EC:3.4.21.88); K01356 repressor LexA [EC:3.4.21.88] Tax=RBG_16_Actinobacteria_68_12_curated
LexA family transcriptional repressor (EC:3.4.21.88)
LexA repressor n=1 Tax=Patulibacter medicamentivorans RepID=H0E864_9ACTN
13_1_20cm_3_scaffold_267_trna_1
unknown

Not on your lists

comp(23206..23291)
DNA (86bp)
transferRNA
13_1_20cm_3_scaffold_267_25
RBG_16_Chloroflexi_57_9_curated, Chloroflexi, Bacteria

Not on your lists

23340..24773
DNA (1434bp) protein (478aa)
peptidase U62 modulator of DNA gyrase; K03568 TldD protein Tax=RBG_16_Chloroflexi_57_9_curated
TldD/PmbA family protein id=4684400 bin=GWC2_Chloroflexi_73_18 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=TA06 tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
peptidase U62 modulator of DNA gyrase
13_1_20cm_3_scaffold_267_26
RBG_16_RIF_CHLX_69_14_curated, RIF-CHLX, Bacteria

Not on your lists

24770..26128
DNA (1359bp) protein (453aa)
TldD protein Tax=RBG_16_RIF_CHLX_69_14_curated
Peptidase U62 family protein id=4684399 bin=GWC2_Chloroflexi_73_18 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=TA06 tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
peptidase U62 modulator of DNA gyrase
13_1_20cm_3_scaffold_267_27
unknown

Not on your lists

comp(26097..27341)
DNA (1245bp) protein (415aa)

This feature has no annotations

13_1_20cm_3_scaffold_267_28
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

comp(27398..27619)
DNA (222bp) protein (74aa)
Tax=RBG_16_Actinobacteria_68_12_curated
13_1_20cm_3_scaffold_267_29
RBG_13_Chloroflexi_60_13_curated, Chloroflexi, Bacteria

Not on your lists

comp(27643..28038)
DNA (396bp) protein (132aa)
Two component transcriptional regulator, LuxR family n=5 Tax=Thermus RepID=F6DI66_THETG
LuxR family two component transcriptional regulator Tax=RBG_13_Chloroflexi_60_13_curated
response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain
Displaying items 1-30 of 39 in total

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