ggKbase home page

13_1_20cm_3_scaffold_3644

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_3_scaffold_3644_1
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

1..1983
DNA (1983bp) protein (661aa)
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DBR5_9BACT
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG {ECO:0000256|HAMAP-Rule:MF_00129}; Glucose-inhibited division protein A {ECO:0000256|HAMAP-Rule:MF_00129}; TaxID=497964 species="Bacter
gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
13_1_20cm_3_scaffold_3644_2
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

2004..2633
DNA (630bp) protein (210aa)
hypothetical protein n=1 Tax=Verrucomicrobium spinosum RepID=UPI00017448F9
Glycerol-3-phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; Acyl-PO4 G3P acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; Acyl-phosphate--glycerol-3-phosphate acyltransferase {ECO:000025
membrane protein
13_1_20cm_3_scaffold_3644_3
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

2630..3319
DNA (690bp) protein (230aa)
Glycerol-3-phosphate dehydrogenase [NAD(P)+] {ECO:0000256|HAMAP-Rule:MF_00394}; EC=1.1.1.94 {ECO:0000256|HAMAP-Rule:MF_00394};; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase {ECO:0000256|HAMAP-
gpsA; glycerol-3-phosphate dehydrogenase (EC:1.1.1.94)
Glycerol-3-phosphate dehydrogenase [NAD(P)+] n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D2N3_9BACT
13_1_20cm_3_scaffold_3644_4
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

3316..3585
DNA (270bp) protein (90aa)
Glycerol-3-phosphate dehydrogenase [NAD(P)+] {ECO:0000256|HAMAP-Rule:MF_00394}; EC=1.1.1.94 {ECO:0000256|HAMAP-Rule:MF_00394};; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase {ECO:0000256|HAMAP-
Glycerol-3-phosphate dehydrogenase [NAD(P)+] n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XR52_9BACT
gpsA; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
13_1_20cm_3_scaffold_3644_5
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(3593..4177)
DNA (585bp) protein (195aa)
Phosphoribosylglycinamide formyltransferase {ECO:0000256|HAMAP-Rule:MF_01930}; EC=2.1.2.2 {ECO:0000256|HAMAP-Rule:MF_01930};; 5'-phosphoribosylglycinamide transformylase {ECO:0000256|HAMAP-Rule:MF_019
Phosphoribosylglycinamide formyltransferase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CU39_9BACT
phosphoribosylglycinamide formyltransferase
13_1_20cm_3_scaffold_3644_6
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(4168..4656)
DNA (489bp) protein (163aa)
Cytidyltransferase-related domain protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CU38_9BACT
Cytidyltransferase-related domain protein {ECO:0000313|EMBL:EDY22076.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
rfaE bifunctional protein
13_1_20cm_3_scaffold_3644_7
Chondromyces apiculatus, Chondromyces, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4653..5513)
DNA (861bp) protein (287aa)
Diacylglycerol kinase catalytic region n=1 Tax=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) RepID=A9B5F5_HERA2
Transcription regulator {ECO:0000313|EMBL:EYF05822.1}; TaxID=1192034 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Chondromyces.;" source="Chondrom
diacylglycerol kinase catalytic protein
13_1_20cm_3_scaffold_3644_8
Pseudogymnoascus pannorum, Pseudogymnoascus, Leotiomycetes, Ascomycota, Fungi

Not on your lists

comp(5544..5939)
DNA (396bp) protein (132aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI00035C1245
Uncharacterized protein {ECO:0000313|EMBL:KFY30725.1}; TaxID=1420906 species="Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Leotiomycetes; Leotiomycetes incertae sedis; Pseudeurotiaceae; Pseu
ATP/GTP-binding protein
13_1_20cm_3_scaffold_3644_9
Talaromyces cellulolyticus, Talaromyces, Eurotiales, Eurotiomycetidae, Ascomycota, Fungi

Not on your lists

comp(6063..7925)
DNA (1863bp) protein (621aa)
Putative Nephrocystin-3 n=1 Tax=Streptomyces aurantiacus JA 4570 RepID=S3ZI89_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:GAM34008.1}; Flags: Fragment;; TaxID=1472165 species="Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Tri
hypothetical protein
13_1_20cm_3_scaffold_3644_10
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

8019..8501
DNA (483bp) protein (161aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D5D7_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY18342.1}; Flags: Precursor;; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
13_1_20cm_3_scaffold_3644_11
unknown

Not on your lists

comp(8657..8938)
DNA (282bp) protein (94aa)

This feature has no annotations

13_1_20cm_3_scaffold_3644_12
unknown

Not on your lists

comp(9117..10394)
DNA (1278bp) protein (426aa)

This feature has no annotations

13_1_20cm_3_scaffold_3644_13
unknown

Not on your lists

comp(10458..11351)
DNA (894bp) protein (298aa)

This feature has no annotations

13_1_20cm_3_scaffold_3644_14
unknown

Not on your lists

comp(11534..11866)
DNA (333bp) protein (111aa)

This feature has no annotations

13_1_20cm_3_scaffold_3644_15

Not on your lists

12123..12473
DNA (351bp) protein (117aa)
YD repeat protein n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZNT0_OPITP
Uncharacterized protein {ECO:0000313|EMBL:AIA12773.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
YD repeat-containing protein
13_1_20cm_3_scaffold_3644_16
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

12546..13310
DNA (765bp) protein (255aa)
Rho termination factor, N-terminal domain protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D7L6_9BACT
Rho termination factor, N-terminal domain protein {ECO:0000313|EMBL:EDY17633.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin4
13_1_20cm_3_scaffold_3644_17
RLO_Flavobacteria_35_11, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(13345..14034)
DNA (690bp) protein (230aa)
Uncharacterized protein n=1 Tax=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8) RepID=L7UGJ1_MYXSD
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Flavobacteria_35_11_curated
hypothetical protein
13_1_20cm_3_scaffold_3644_18
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

14268..16718
DNA (2451bp) protein (817aa)
Permease n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZXW4_OPITP
Permease {ECO:0000313|EMBL:ACB75166.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
permease
13_1_20cm_3_scaffold_3644_19
unknown

Not on your lists

16746..16988
DNA (243bp) protein (81aa)

This feature has no annotations

13_1_20cm_3_scaffold_3644_20
GWF2_Bacteroidetes_38_335_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(16887..18392)
DNA (1506bp) protein (502aa)
amino acid-transporting permease; K03294 basic amino acid/polyamine antiporter, APA family Tax=GWF2_Bacteroidetes_38_335_curated
Amino acid transport protein id=4128414 bin=GWF2_Bacteroidetes_38_335 species=Pedobacter sp. BAL39 genus=Pedobacter taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_38_335 organism_group=Bacteroidetes organism_desc=a11
amino acid permease-associated protein
13_1_20cm_3_scaffold_3644_21
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(18454..19182)
DNA (729bp) protein (243aa)
Amino acid permease-associated region n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q029N7_SOLUE
Amino acid/polyamine/organocation transporter, APC superfamily (TC 2.A.3) {ECO:0000313|EMBL:CDM65482.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" sour
amino acid permease
13_1_20cm_3_scaffold_3644_22
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(19179..19865)
DNA (687bp) protein (229aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00036DF960
Amino acid/polyamine/organocation transporter, APC superfamily (TC 2.A.3) {ECO:0000313|EMBL:CDM65482.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" sour
amino acid permease
Displaying 22 items

View Taxonomy