ggKbase home page

13_1_20cm_3_scaffold_371

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_3_scaffold_371_1
RBG_16_Actinobacteria_68_21_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

37..507
DNA (471bp) protein (157aa)
Uncharacterized protein n=1 Tax=Nitrolancetus hollandicus Lb RepID=I4EF56_9CHLR
hypothetical protein Tax=RBG_16_Actinobacteria_68_21_curated
hypothetical protein
13_1_20cm_3_scaffold_371_2
Ktedonobacter racemifer, Ktedonobacter, Ktedonobacterales, Ktedonobacteria, Chloroflexi, Bacteria

Not on your lists

comp(1131..1820)
DNA (690bp) protein (230aa)
Uncharacterized protein n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6U052_9CHLR
Uncharacterized protein {ECO:0000313|EMBL:EFH82192.1}; TaxID=485913 species="Bacteria; Chloroflexi; Ktedonobacteria; Ktedonobacterales; Ktedonobacteraceae; Ktedonobacter.;" source="Ktedonobacter racem
hypothetical protein
13_1_20cm_3_scaffold_371_3
Streptomyces roseochromogenus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1845..2471)
DNA (627bp) protein (209aa)
Uncharacterized protein n=1 Tax=Streptomyces roseochromogenes subsp. oscitans DS 12.976 RepID=V6K0S9_STRRC
Uncharacterized protein {ECO:0000313|EMBL:EST25840.1}; TaxID=1352936 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces roseochromogenus subsp
hypothetical protein
13_1_20cm_3_scaffold_371_4
Streptomyces sp. CNQ-509, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2480..3286)
DNA (807bp) protein (269aa)
hypothetical protein n=1 Tax=Actinoplanes globisporus RepID=UPI00037C8F51 rbh
Uncharacterized protein {ECO:0000313|EMBL:AKH82175.1}; TaxID=444103 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. CNQ-509.;"
hypothetical protein
13_1_20cm_3_scaffold_371_5
Amycolatopsis mediterranei, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3335..3685)
DNA (351bp) protein (117aa)
ArsR family transcriptional regulator n=3 Tax=Amycolatopsis mediterranei RepID=D8HWU3_AMYMU
ArsR family transcriptional regulator {ECO:0000313|EMBL:AEK43285.1}; TaxID=713604 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis medit
ArsR family transcriptional regulator
13_1_20cm_3_scaffold_371_6
Frankia sp. EUN1f, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3682..4128)
DNA (447bp) protein (149aa)
Activator of Hsp90 ATPase 1 family protein n=1 Tax=Frankia sp. EUN1f RepID=D3CW66_9ACTO
Activator of Hsp90 ATPase 1 family protein {ECO:0000313|EMBL:EFC85156.1}; TaxID=102897 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. EUN1f.;"
activator of HSP90 ATPase 1 family protein
13_1_20cm_3_scaffold_371_7
unknown

Not on your lists

4364..4927
DNA (564bp) protein (188aa)

This feature has no annotations

13_1_20cm_3_scaffold_371_8
Nocardia nova, Nocardia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5047..5829)
DNA (783bp) protein (261aa)
hypothetical protein n=1 Tax=Nocardioides sp. Iso805N RepID=UPI0003697437
Putative oxidoreductase, SDR family {ECO:0000313|EMBL:AHH18423.1}; TaxID=1415166 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Nocardia.;" source="Nocardia nova SH22a.;"
putative oxidoreductase, SDR family
13_1_20cm_3_scaffold_371_9
Bhargavaea cecembensis, Bhargavaea, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(5918..7138)
DNA (1221bp) protein (407aa)
Sialic acid permease n=1 Tax=Bhargavaea cecembensis DSE10 RepID=M7P8X9_9BACL rbh
Sialic acid permease {ECO:0000313|EMBL:EMR06964.1}; TaxID=1235279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Planococcaceae; Bhargavaea.;" source="Bhargavaea cecembensis DSE10.;"
major facilitator superfamily protein
13_1_20cm_3_scaffold_371_10
Solibacillus silvestris, Solibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(7221..8699)
DNA (1479bp) protein (493aa)
Succinate dehydrogenase/fumarate reductase, flavoprotein subunit n=1 Tax=Solibacillus silvestris (strain StLB046) RepID=F2F478_SOLSS rbh
Succinate dehydrogenase/fumarate reductase, flavoprotein subunit {ECO:0000313|EMBL:BAK18108.1}; TaxID=1002809 species="Bacteria; Firmicutes; Bacilli; Bacillales; Planococcaceae; Solibacillus.;" source
succinate dehydrogenase/fumarate reductase, flavoprotein subunit
13_1_20cm_3_scaffold_371_11
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8782..10152)
DNA (1371bp) protein (457aa)
Fumarate reductase/succinate dehydrogenase flavoprotein-like protein n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AZ47_RUBXD rbh
Fumarate reductase/succinate dehydrogenase flavoprotein-like protein {ECO:0000313|EMBL:ABG03331.1}; TaxID=266117 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Ru
fumarate reductase/succinate dehydrogenase flavoprotein-like protein
13_1_20cm_3_scaffold_371_12
Desulfotomaculum acetoxidans, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10162..10749)
DNA (588bp) protein (196aa)
NADH:flavin oxidoreductase/NADH oxidase n=1 Tax=Desulfotomaculum acetoxidans (strain ATCC 49208 / DSM 771 / VKM B-1644) RepID=C8VZK0_DESAS
NADH:flavin oxidoreductase/NADH oxidase {ECO:0000313|EMBL:ACV64945.1}; TaxID=485916 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfotomaculum.;" source="Desulfotomacul
NADH:flavin oxidoreductase
13_1_20cm_3_scaffold_371_13
Peptococcaceae bacterium BRH_c23, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10753..12174)
DNA (1422bp) protein (474aa)
2,4-dienoyl-CoA reductase (EC:1.3.1.34)
2,4-dienoyl-CoA reductase (NADPH) n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4D0L5_PSEUX
Uncharacterized protein {ECO:0000313|EMBL:KJS46922.1}; TaxID=1629714 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae.;" source="Peptococcaceae bacterium BRH_c23.;"
13_1_20cm_3_scaffold_371_14
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(12175..12891)
DNA (717bp) protein (239aa)
livF2; high-affinity branched-chain amino acid transport protein (ABC superfamily, ATP-binding) Tax=CSP1_6_Rokubacteria
livF2; high-affinity branched-chain amino acid transport protein (ABC superfamily, ATP-binding) id=14627489 bin=bin7_NC10_sister species=Azospirillum brasilense genus=Azospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
ABC transporter-like protein
13_1_20cm_3_scaffold_371_15
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12884..13648)
DNA (765bp) protein (255aa)
Putative ABC tranpsorter n=1 Tax=Nitratireductor indicus C115 RepID=K2P7G8_9RHIZ
Branched-chain amino acid ABC transporter permease {ECO:0000313|EMBL:EXL01921.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;"
ABC transporter-like protein
13_1_20cm_3_scaffold_371_16
RBG_13_Deltaproteobacteria_61_14_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13648..14598)
DNA (951bp) protein (317aa)
inner-membrane translocator; K01998 branched-chain amino acid transport system permease protein Tax=RBG_13_Deltaproteobacteria_61_14_curated
putative ABC tranpsorter, permease protein (N-ter) and ATP-binding protein (C-ter); branched-chain amino acid transport protein id=14628109 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Cyanobacteria tax=bin7_NC10_sister organism_group=NC10
branched-chain amino acid ABC transporter permease
13_1_20cm_3_scaffold_371_17
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(14608..15501)
DNA (894bp) protein (298aa)
inner-membrane translocator Tax=GWA2_Rokubacteria_70_23_curated
Putative High-affinity branched-chain amino acid transport system permease protein id=4502436 bin=GWF2_Methylomirabilis_70_14 species=Nitratireductor indicus genus=Nitratireductor taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
branched-chain amino acid ABC transporter permease
13_1_20cm_3_scaffold_371_18
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(15507..16769)
DNA (1263bp) protein (421aa)
extracellular ligand-binding receptor Tax=GWA2_Rokubacteria_70_23_curated
Extracellular ligand-binding receptor id=4502371 bin=GWF2_Methylomirabilis_70_14 species=Burkholderia sp. YI23 genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
extracellular ligand-binding receptor
13_1_20cm_3_scaffold_371_19
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(16802..17731)
DNA (930bp) protein (310aa)
carboxyvinyl-carboxyphosphonate phosphorylmutase; K01003 carboxyvinyl-carboxyphosphonate phosphorylmutase [EC:2.7.8.23] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Dml; 2,3-dimethylmalate lyase (EC:4.1.3.32)
hypothetical protein n=1 Tax=Streptomyces sulphureus RepID=UPI0002E91900
13_1_20cm_3_scaffold_371_20
Burkholderia glathei, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17724..19064)
DNA (1341bp) protein (447aa)
Dihydroorotase {ECO:0000313|EMBL:CDY78858.1}; EC=3.5.2.3 {ECO:0000313|EMBL:CDY78858.1};; Uncharacterized protein {ECO:0000313|EMBL:KDR38564.1}; TaxID=60547 species="Bacteria; Proteobacteria; Betaprote
Hydantoinase n=1 Tax=Burkholderia sp. YI23 RepID=G8MH15_9BURK
hydantoinase
13_1_20cm_3_scaffold_371_21
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19061..19777)
DNA (717bp) protein (239aa)
hypothetical protein n=1 Tax=Streptomyces sulphureus RepID=UPI000313AEFF
Hydrolase {ECO:0000313|EMBL:KKB09304.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
isochorismatase hydrolase
13_1_20cm_3_scaffold_371_22
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20035..20289)
DNA (255bp) protein (85aa)
MmgE/PrpD n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AZ34_RUBXD
MmgE/PrpD {ECO:0000313|EMBL:ABG03344.1}; TaxID=266117 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter xylanoph
MmgE/PrpD
Displaying 22 items

View Taxonomy