ggKbase home page

13_1_20cm_3_scaffold_522

Search features with annotation key words

Displaying items 1-30 of 33 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_3_scaffold_522_1
unknown

Not on your lists

204..617
DNA (414bp) protein (138aa)

This feature has no annotations

13_1_20cm_3_scaffold_522_2
unknown

Not on your lists

710..1153
DNA (444bp) protein (148aa)

This feature has no annotations

13_1_20cm_3_scaffold_522_3
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(1228..3516)
DNA (2289bp) protein (763aa)
Glutamate carboxypeptidase II {ECO:0000313|EMBL:ABF41820.1}; EC=3.4.17.21 {ECO:0000313|EMBL:ABF41820.1};; Flags: Precursor;; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacte
Glutamate carboxypeptidase II n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IMT0_KORVE
glutamate carboxypeptidase II
13_1_20cm_3_scaffold_522_4
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

3732..4574
DNA (843bp) protein (281aa)
Predicted TIM-barrel fold metal-dependent hydrolase, COG3618 {ECO:0000313|EMBL:CDM65040.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomon
amidohydrolase 2; K07046 id=12554612 bin=CNBR_ACIDO species=Paenibacillus curdlanolyticus genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
amidohydrolase
13_1_20cm_3_scaffold_522_5
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

4683..6254
DNA (1572bp) protein (524aa)
Altronate dehydratase {ECO:0000313|EMBL:CDM65034.1}; EC=4.2.1.7 {ECO:0000313|EMBL:CDM65034.1};; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrin
D-galactarate dehydratase/altronate hydrolase family protein, insertion n=1 Tax=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) RepID=C1F5U9_ACIC5
D-galactarate dehydratase/altronate hydrolase family protein, insertion
13_1_20cm_3_scaffold_522_6
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

6485..7051
DNA (567bp) protein (189aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896) RepID=D2QEC4_SPILD
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ADB36479.1}; Flags: Precursor;; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="S
short-chain dehydrogenase/reductase SDR
13_1_20cm_3_scaffold_522_7
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

7063..7833
DNA (771bp) protein (257aa)
Short-chain dehydrogenase/reductase family oxidoreductase n=1 Tax=Algoriphagus machipongonensis RepID=A3I065_9BACT rbh
Uncharacterized protein {ECO:0000313|EMBL:CDM65041.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
short chain dehydrogenase
13_1_20cm_3_scaffold_522_8
unknown

Not on your lists

comp(7838..8233)
DNA (396bp) protein (132aa)

This feature has no annotations

13_1_20cm_3_scaffold_522_9
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

8534..9793
DNA (1260bp) protein (420aa)
Secretion protein HlyD n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IUS9_KORVE rbh
Secretion protein HlyD {ECO:0000313|EMBL:ABF39371.1}; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatilis (strain
secretion protein HlyD
13_1_20cm_3_scaffold_522_10
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

9905..10630
DNA (726bp) protein (242aa)
ABC transporter, ATPase subunit n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IUS8_KORVE
ABC transporter, ATPase subunit {ECO:0000313|EMBL:ABF39372.1}; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatili
ABC transporter ATPase
13_1_20cm_3_scaffold_522_11
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

10627..12063
DNA (1437bp) protein (479aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 89 RepID=UPI00035D5859
ABC efflux pump, inner membrane subunit {ECO:0000313|EMBL:ABF39302.1}; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter v
efflux ABC transporter inner membrane protein
13_1_20cm_3_scaffold_522_12
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

12045..13013
DNA (969bp) protein (323aa)
ABC efflux pump, inner membrane subunit n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IUZ8_KORVE
ABC efflux pump, inner membrane subunit {ECO:0000313|EMBL:ABF39302.1}; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter v
efflux ABC transporter inner membrane protein
13_1_20cm_3_scaffold_522_13
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

13026..15485
DNA (2460bp) protein (820aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI000380AAD9 rbh
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
hypothetical protein
13_1_20cm_3_scaffold_522_14
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

15494..17971
DNA (2478bp) protein (826aa)
Putative uncharacterized protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01T42_SOLUE rbh
Uncharacterized protein {ECO:0000313|EMBL:ABJ87178.1}; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatu
hypothetical protein
13_1_20cm_3_scaffold_522_15
Gloeobacter violaceus, Gloeobacter, Gloeobacterales, Gloeobacteria, Cyanobacteria, Bacteria

Not on your lists

17980..19848
DNA (1869bp) protein (623aa)
Gll1201 protein n=1 Tax=Gloeobacter violaceus (strain PCC 7421) RepID=Q7NLC5_GLOVI
Gll1201 protein {ECO:0000313|EMBL:BAC89142.1}; TaxID=251221 species="Bacteria; Cyanobacteria; Gloeobacteria; Gloeobacterales; Gloeobacter.;" source="Gloeobacter violaceus (strain PCC 7421).;"
hypothetical protein
13_1_20cm_3_scaffold_522_16
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

19848..20372
DNA (525bp) protein (175aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI0003714E5B
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
hypothetical protein
13_1_20cm_3_scaffold_522_17
Gloeobacter kilaueensis, Gloeobacter, Gloeobacterales, Gloeobacteria, Cyanobacteria, Bacteria

Not on your lists

20380..22833
DNA (2454bp) protein (818aa)
Macrolide transporter ATP-binding /permease protein n=1 Tax=Gloeobacter kilaueensis JS1 RepID=U5QSA7_9CYAN
Macrolide transporter ATP-binding /permease protein {ECO:0000313|EMBL:AGY60600.1}; TaxID=1183438 species="Bacteria; Cyanobacteria; Gloeobacteria; Gloeobacterales; Gloeobacter.;" source="Gloeobacter ki
macrolide transporter ATP-binding/permease protein
13_1_20cm_3_scaffold_522_18
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

22842..25247
DNA (2406bp) protein (802aa)
Putative uncharacterized protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q023P1_SOLUE
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
hypothetical protein
13_1_20cm_3_scaffold_522_19
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

25252..27678
DNA (2427bp) protein (809aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI000365264B
Uncharacterized protein {ECO:0000313|EMBL:ABJ84263.1}; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatu
hypothetical protein
13_1_20cm_3_scaffold_522_20
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

27686..30190
DNA (2505bp) protein (835aa)
Putative uncharacterized protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01YN1_SOLUE
permease Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
hypothetical protein
13_1_20cm_3_scaffold_522_21
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

30210..30857
DNA (648bp) protein (216aa)
ABC transporter, ATPase subunit n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IUS3_KORVE
ABC transporter, ATPase subunit {ECO:0000313|EMBL:ABF39377.1}; Flags: Precursor;; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="K
ABC transporter ATPase
13_1_20cm_3_scaffold_522_22
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

30854..32761
DNA (1908bp) protein (636aa)
Outer membrane efflux protein n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IUS2_KORVE rbh
Outer membrane efflux protein {ECO:0000313|EMBL:ABF39378.1}; Flags: Precursor;; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Kor
outer membrane efflux protein
13_1_20cm_3_scaffold_522_23
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

32764..34176
DNA (1413bp) protein (471aa)
Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IUS1_KORVE rbh
Two component, sigma54 specific, transcriptional regulator, Fis family {ECO:0000313|EMBL:ABF39379.1}; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Kor
Fis family transcriptional regulator
13_1_20cm_3_scaffold_522_24
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

34166..35599
DNA (1434bp) protein (478aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacte
Periplasmic sensor signal transduction histidine kinase n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IUS0_KORVE
sensor signal transduction histidine kinase
13_1_20cm_3_scaffold_522_25
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

35703..36092
DNA (390bp) protein (130aa)
Signal recognition particle protein n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IM64_KORVE
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacte
Suspect SCG annotation. See neighboring gene [13_1_20cm_3_scaffold_522_26].
signal recognition particle subunit FFH/SRP54 (srp54)
13_1_20cm_3_scaffold_522_26
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists


36098..37003
DNA (906bp) protein (302aa)
Signal recognition particle protein n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IM64_KORVE
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacte
signal recognition particle subunit FFH/SRP54 (srp54)
13_1_20cm_3_scaffold_522_27
unknown

Not on your lists

comp(37154..37486)
DNA (333bp) protein (111aa)

This feature has no annotations

13_1_20cm_3_scaffold_522_28
Acidobacterium capsulatum, Acidobacterium, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

37672..39849
DNA (2178bp) protein (726aa)
Molybdopterin oxidoreductase n=1 Tax=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) RepID=C1F1B3_ACIC5 rbh
Molybdopterin oxidoreductase {ECO:0000313|EMBL:ACO31480.1}; TaxID=240015 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Acidobacterium.;" source="Acidobacterium capsulatum (str
molybdopterin oxidoreductase
13_1_20cm_3_scaffold_522_29
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

39919..42846
DNA (2928bp) protein (976aa)
Surface antigen (D15) n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IV47_KORVE rbh
Surface antigen (D15) {ECO:0000313|EMBL:ABF39253.1}; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatilis (strain
surface antigen (D15)
13_1_20cm_3_scaffold_522_30
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

43107..43862
DNA (756bp) protein (252aa)
Outer membrane chaperone Skp (OmpH) n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IV48_KORVE
Outer membrane chaperone Skp (OmpH) {ECO:0000313|EMBL:ABF39252.1}; Flags: Precursor;; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" sourc
outer membrane chaperone Skp
Displaying items 1-30 of 33 in total

View Taxonomy