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13_1_20cm_3_scaffold_9

Search features with annotation key words

Displaying items 1-30 of 47 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_3_scaffold_9_1
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

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3..2369
DNA (2367bp) protein (789aa)
PKD domain-containing protein Tax=RBG_16_Euryarchaeota_67_27_curated
PKD domain-containing protein id=24547293 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
PKD domain containing protein
13_1_20cm_3_scaffold_9_2
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

2454..2897
DNA (444bp) protein (148aa)
Integrase catalytic region n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F650_CONWI
Integrase catalytic region {ECO:0000313|EMBL:ADB48723.1}; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter
integrase catalytic subunit
13_1_20cm_3_scaffold_9_3
RBG_16_Actinobacteria_67_15_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

3019..3276
DNA (258bp) protein (86aa)
hypothetical protein n=1 Tax=Salinispora arenicola RepID=UPI0003627BE3
transposase Tax=RBG_16_Actinobacteria_67_15_curated
transposase
13_1_20cm_3_scaffold_9_4
Owenweeksia hongkongensis, Owenweeksia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(3445..4401)
DNA (957bp) protein (319aa)
Nucleoside-diphosphate-sugar epimerase n=1 Tax=Owenweeksia hongkongensis (strain DSM 17368 / JCM 12287 / NRRL B-23963) RepID=G8R7P3_OWEHD rbh
Nucleoside-diphosphate-sugar epimerase {ECO:0000313|EMBL:AEV32396.1}; TaxID=926562 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Cryomorphaceae; Owenweeksia.;" source="Owenweeksi
nucleoside-diphosphate-sugar epimerase
13_1_20cm_3_scaffold_9_5
Nostoc punctiforme, Nostoc, Nostocales, Cyanobacteria, Bacteria

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comp(4470..5708)
DNA (1239bp) protein (413aa)
FAD dependent oxidoreductase {ECO:0000313|EMBL:ACC79805.1}; EC=1.5.3.1 {ECO:0000313|EMBL:ACC79805.1};; TaxID=63737 species="Bacteria; Cyanobacteria; Nostocales; Nostocaceae; Nostoc.;" source="Nostoc p
hydroxyglutarate oxidase (EC:1.5.3.1)
FAD dependent oxidoreductase n=1 Tax=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) RepID=B2IW60_NOSP7
13_1_20cm_3_scaffold_9_6
Geobacter metallireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5702..6463)
DNA (762bp) protein (254aa)
Uncharacterized protein n=2 Tax=Geobacter metallireducens RepID=Q39U20_GEOMG
Uncharacterized protein {ECO:0000313|EMBL:ABB32254.1}; TaxID=269799 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter metallire
hypothetical protein
13_1_20cm_3_scaffold_9_7
RBG_19FT_COMBO_Gammaproteobacteria_61_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6464..7243)
DNA (780bp) protein (260aa)
Polysaccharide deacetylase n=1 Tax=Marinobacter sp. EVN1 RepID=U7NDN2_9ALTE
polysaccharide deacetylase pda4C Tax=RBG_19FT_COMBO_Gammaproteobacteria_61_10_curated
polysaccharide deacetylase
13_1_20cm_3_scaffold_9_8
Cylindrospermopsis raciborskii, Cylindrospermopsis, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(7240..8580)
DNA (1341bp) protein (447aa)
exopolysaccharide synthesis protein (EC:2.7.10.-)
Exopolysaccharide synthesis protein n=1 Tax=Anabaena sp. 90 RepID=K7W0A4_9NOST
Lipopolysaccharide biosynthesis {ECO:0000313|EMBL:EFA69923.1}; TaxID=533240 species="Bacteria; Cyanobacteria; Nostocales; Nostocaceae; Cylindrospermopsis.;" source="Cylindrospermopsis raciborskii CS-5
13_1_20cm_3_scaffold_9_9
unknown

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8796..9593
DNA (798bp) protein (266aa)

This feature has no annotations

13_1_20cm_3_scaffold_9_10
Candidatus Korarchaeum cryptofilum, Candidatus Korarchaeum, Korarchaeota, Archaea

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comp(9605..10231)
DNA (627bp) protein (209aa)
GCN5-related N-acetyltransferase n=1 Tax=Korarchaeum cryptofilum (strain OPF8) RepID=B1L4T2_KORCO
GCN5-related N-acetyltransferase {ECO:0000313|EMBL:ACB07461.1}; TaxID=374847 species="Archaea; Korarchaeota; Candidatus Korarchaeum.;" source="Korarchaeum cryptofilum (strain OPF8).;"
N-acetyltransferase GCN5
13_1_20cm_3_scaffold_9_11
Lactobacillus oryzae, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(10228..10515)
DNA (288bp) protein (96aa)
Uncharacterized protein {ECO:0000313|EMBL:GAK46915.1}; TaxID=1202668 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus oryzae.;"
13_1_20cm_3_scaffold_9_12
Caldisericum exile, Caldisericum, Caldisericales, Caldisericia, Caldiserica, Bacteria

Not on your lists

comp(10515..11285)
DNA (771bp) protein (257aa)
Putative hydrolase n=1 Tax=Caldisericum exile (strain DSM 21853 / NBRC 104410 / AZM16c01) RepID=I0GIT8_CALEA
Putative hydrolase {ECO:0000313|EMBL:BAL80675.1}; TaxID=511051 species="Bacteria; Caldiserica; Caldisericia; Caldisericales; Caldisericaceae; Caldisericum.;" source="Caldisericum exile (strain DSM 218
putative hydrolase
13_1_20cm_3_scaffold_9_13
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

comp(11327..12211)
DNA (885bp) protein (295aa)
succinate dehydrogenase, subunit C; K03389 heterodisulfide reductase subunit B [EC:1.8.98.1] Tax=RBG_16_Actinobacteria_68_12_curated
Succinate dehydrogenase, subunit C n=1 Tax=Persephonella marina (strain DSM 14350 / EX-H1) RepID=C0QTY5_PERMH
succinate dehydrogenase, subunit C
13_1_20cm_3_scaffold_9_14
RBG_16_Actinobacteria_67_10_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

comp(12208..13320)
DNA (1113bp) protein (371aa)
succinate dehydrogenase subunit B (EC:1.3.5.1); K00240 succinate dehydrogenase iron-sulfur subunit [EC:1.3.99.1] Tax=RBG_16_Actinobacteria_67_10_curated
succinate dehydrogenase subunit B (EC:1.3.5.1)
Succinate dehydrogenase subunit B n=1 Tax=Magnetococcus sp. (strain MC-1) RepID=A0L4R2_MAGSM
13_1_20cm_3_scaffold_9_15
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

comp(13317..14087)
DNA (771bp) protein (257aa)
Lipoprotein n=1 Tax=Streptomyces coelicoflavus ZG0656 RepID=H1QSR7_9ACTO
hypothetical protein Tax=RBG_16_Actinobacteria_68_12_curated
Putative lipoprotein
13_1_20cm_3_scaffold_9_16
GWC2_Deltaproteobacteria_42_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14087..15772)
DNA (1686bp) protein (562aa)
sdhA; succinate dehydrogenase/fumarate reductase flavoprotein subunit (EC:1.3.99.1); K00239 succinate dehydrogenase flavoprotein subunit [EC:1.3.99.1] Tax=GWC2_Deltaproteobacteria_42_11_curated
sdhA; succinate dehydrogenase/fumarate reductase flavoprotein subunit (EC:1.3.99.1)
Succinate dehydrogenase/fumarate reductase, flavoprotein subunit id=4850825 bin=GWC2_Deltaproteobacteria_56_8 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Deltaproteobacteria_56_8 organism_group=Deltaproteobacteria rbh
13_1_20cm_3_scaffold_9_17
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

15872..17404
DNA (1533bp) protein (511aa)
phosphoenolpyruvate carboxykinase (EC:4.1.1.49); K01610 phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49] Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
phosphoenolpyruvate carboxykinase (EC:4.1.1.49)
Phosphoenolpyruvate carboxykinase (ATP) n=1 Tax=Desulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17) RepID=F6CLG2_DESK7
13_1_20cm_3_scaffold_9_18
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

comp(17647..18840)
DNA (1194bp) protein (398aa)
Peptidase M29 aminopeptidase II n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3FFD9_CONWI
Peptidase M29 aminopeptidase II {ECO:0000313|EMBL:ADB53732.1}; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexiba
peptidase M29 aminopeptidase II
13_1_20cm_3_scaffold_9_19
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

18878..19714
DNA (837bp) protein (279aa)
Tyrosine recombinase XerC n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F1B9_CONWI
Tyrosine recombinase XerC {ECO:0000256|HAMAP-Rule:MF_01808}; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibact
integrase
13_1_20cm_3_scaffold_9_20
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

19868..20770
DNA (903bp) protein (301aa)
tyrosine recombinase XerD; K04763 integrase/recombinase XerD Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
tyrosine recombinase XerD id=12554085 bin=CNBR_ACIDO species=Myxococcus stipitatus genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
tyrosine recombinase XerD
13_1_20cm_3_scaffold_9_21
unknown

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20781..20957
DNA (177bp) protein (59aa)

This feature has no annotations

13_1_20cm_3_scaffold_9_22
unknown

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comp(20954..21454)
DNA (501bp) protein (167aa)

This feature has no annotations

13_1_20cm_3_scaffold_9_23
RBG_16_Chloroflexi_60_22_curated, Chloroflexi, Bacteria

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21570..22664
DNA (1095bp) protein (365aa)
isocitrate dehydrogenase (NADP) (EC:1.1.1.41) Tax=RBG_16_Chloroflexi_60_22_curated
isocitrate dehydrogenase (NADP) (EC:1.1.1.41)
hypothetical protein n=1 Tax=candidate division OP9 bacterium OP9-cSCG RepID=UPI000365B819
13_1_20cm_3_scaffold_9_24
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

22657..23580
DNA (924bp) protein (308aa)
malate dehydrogenase (NAD) (EC:1.1.1.37); K00024 malate dehydrogenase [EC:1.1.1.37] Tax=RBG_16_Actinobacteria_68_12_curated
Malate dehydrogenase n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C2T1_SPHTD
malate dehydrogenase, NAD-dependent
13_1_20cm_3_scaffold_9_25
RBG_16_Actinobacteria_67_10_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

23584..24327
DNA (744bp) protein (248aa)
short-chain dehydrogenase/reductase sdr; K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] Tax=RBG_16_Actinobacteria_67_10_curated
3-oxoacyl-ACP reductase (EC:1.1.1.100)
hypothetical protein n=1 Tax=Amycolatopsis balhimycina RepID=UPI00036D9B09
13_1_20cm_3_scaffold_9_26
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

24327..25349
DNA (1023bp) protein (341aa)
PDZ/DHR/GLGF domain protein n=1 Tax=Acetohalobium arabaticum (strain ATCC 49924 / DSM 5501 / Z-7288) RepID=D9QPT6_ACEAZ
PDZ/DHR/GLGF domain-containing protein; K07177 PDZ domain-containing protein Tax=RBG_16_Actinobacteria_68_12_curated
PDZ/DHR/GLGF domain-containing protein
13_1_20cm_3_scaffold_9_27
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

comp(25580..26617)
DNA (1038bp) protein (346aa)
Putative transcriptional regulator of pyridoxine metabolism n=1 Tax=Modestobacter marinus (strain BC501) RepID=I4ESH6_MODMB
transcriptional regulator of pyridoxine metabolism Tax=RBG_16_Actinobacteria_68_12_curated
transcriptional regulator of pyridoxine metabolism
13_1_20cm_3_scaffold_9_28
Burkholderia glathei, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26697..28148)
DNA (1452bp) protein (484aa)
PKD domain containing protein n=1 Tax=Methanolinea tarda NOBI-1 RepID=G6FM06_9EURY
Pyrrolo-quinoline quinone {ECO:0000313|EMBL:KDR42754.1}; Uncharacterized protein {ECO:0000313|EMBL:CDY79028.1}; TaxID=60547 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burk
13_1_20cm_3_scaffold_9_29
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

comp(28156..29034)
DNA (879bp) protein (293aa)
succinyl-CoA synthetase subunit alpha; K01902 succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] Tax=RBG_16_Actinobacteria_68_12_curated
Succinyl-CoA ligase [ADP-forming] subunit alpha n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F0L5_CONWI
succinyl-CoA synthetase subunit alpha
13_1_20cm_3_scaffold_9_30
Desulfuromonas acetoxidans, Desulfuromonas, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(29036..29689)
DNA (654bp) protein (218aa)
hypothetical protein n=1 Tax=Paenibacillus daejeonensis RepID=UPI00036DD68B
Methyltransferase type 11 {ECO:0000313|EMBL:EAT14932.1}; TaxID=281689 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Desulfuromonadaceae; Desulfuromonas.;" source="Desulfu
ycgJ; ubiquinone/menaquinone biosynthesis methyltransferase
Displaying items 1-30 of 47 in total

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