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13_1_20CM_4_Euryarchaeota_52_7

13_1_20CM_4_Archaea_52_8
In projects: 13_1_20CM_4  |  archaea_ggkbase  |  meta-analysis_of_species_overlap_in_grassland_soils_environments

Consensus taxonomy: Archaea

Taxonomy override: Euryarchaeota

Metagenomic Context

Parent: 13_1_20cm_4_UNK

Properties

Avg. coverage: 7.57 Longest contig: 18.87 Kbp Bin length: 1.57 Mbp GC content: 52.36 %
Contigs count: 883 Features count: 1897 rRNAs count: 0 tRNAs count: 5

Genome completeness

partial RP 20 / 55 MC: 13 BSCG 7 / 51 MC: 3 ASCG 21 / 38 MC: 16

Description

Low GC Euryarchaeota-CB

Displaying items 401-450 of 883 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
13_1_20cm_4_scaffold_220069
Species: Methanosarcina acetivorans (50%)
2 1134 bp 50.88 8.85 88.10
13_1_20cm_4_scaffold_263904
Species: marine sediment metagenome (50%)
2 1011 bp 55.00 10.92 88.13
13_1_20cm_4_scaffold_58123
Phylum: Parcubacteria (66.67%)
3 2047 bp 34.05 3.07 88.23
13_1_20cm_4_scaffold_113262
Domain: Archaea (66.67%)
3 1540 bp 52.60 4.24 88.25
13_1_20cm_4_scaffold_214073
Species: RBG_13_Bathyarchaeota_46_16b_curated (50%)
2 1152 bp 52.26 8.93 88.28
13_1_20cm_4_scaffold_61227
Species: Chthoniobacter flavus (50%)
2 2002 bp 56.59 4.89 88.41
13_1_20cm_4_scaffold_172625
Species: RBG_16_Archaea_50_20_curated (50%)
2 1279 bp 51.21 9.03 88.43
13_1_20cm_4_scaffold_83359
Species: RBG_16_Thaumarchaeota_49_8_curated (50%)
2 2672 bp 51.76 8.92 88.47
13_1_20cm_4_scaffold_185853
Species: Ferroplasma acidarmanus (50%)
2 1236 bp 51.86 8.94 88.59
13_1_20cm_4_scaffold_226100
Species: RBG_16_Bathyarchaeota_57_9_curated (50%)
2 1117 bp 50.04 3.15 88.63
13_1_20cm_4_scaffold_84075
Species: Methanobacterium sp. MB1 (50%)
2 1749 bp 48.60 6.31 88.68
13_1_20cm_4_scaffold_115110
Species: Methanocella conradii (50%)
2 1529 bp 52.78 9.69 88.69
13_1_20cm_4_scaffold_138650
Species: Thermococcus onnurineus (50%)
2 1409 bp 49.40 16.03 88.79
13_1_20cm_4_scaffold_19031
Phylum: Euryarchaeota (66.67%)
3 3264 bp 51.23 10.00 88.79
13_1_20cm_4_scaffold_107630
Species: Halorhabdus utahensis (50%)
2 1574 bp 51.78 4.94 88.82
13_1_20cm_4_scaffold_145175
Species: RBG_13_Bathyarchaeota_46_16b_curated (50%)
2 1380 bp 53.55 2.55 88.91
13_1_20cm_4_scaffold_48813
Phylum: Thaumarchaeota (50%)
4 3387 bp 51.08 5.56 89.11
13_1_20cm_4_scaffold_131155
Species: RIFOXYD12_FULL_Sulfuricurvum_44_77_curated (100%)
1 1444 bp 53.12 3.13 89.13
13_1_20cm_4_scaffold_137802
Species: RBG_16_Acidobacteria_64_8_curated (50%)
2 1412 bp 53.61 3.20 89.24
13_1_20cm_4_scaffold_20583
Phylum: Euryarchaeota (50%)
4 3163 bp 54.32 5.63 89.25
13_1_20cm_4_scaffold_29066
Species: RBG_13_Bathyarchaeota_46_16b_curated (100%)
2 2746 bp 51.57 22.03 89.26
13_1_20cm_4_scaffold_162474
Species: Pyrococcus yayanosii (50%)
2 1313 bp 52.40 27.53 89.34
13_1_20cm_4_scaffold_125463
Species: Methanobrevibacter sp. AbM4 (50%)
2 1473 bp 52.00 7.50 89.41
13_1_20cm_4_scaffold_4118
Species: RBG_16_Archaea_50_20_curated (60%)
10 11405 bp 52.64 12.15 89.43
13_1_20cm_4_scaffold_76716
Species: RBG_16_Archaea_50_20_curated (50%)
4 1818 bp 54.07 33.14 89.44
13_1_20cm_4_scaffold_175975
Domain: Bacteria (66.67%)
3 1267 bp 52.57 15.65 89.50
13_1_20cm_4_scaffold_323428
Domain: Archaea (66.67%)
3 1739 bp 51.29 34.50 89.53
13_1_20cm_4_scaffold_35172
Species: Methanotorris igneus (50%)
2 2536 bp 51.58 3.66 89.55
13_1_20cm_4_scaffold_59830
Species: RBG_19FT_COMBO_Euryarchaeota_69_17_curated (100%)
2 2022 bp 49.60 10.80 89.61
13_1_20cm_4_scaffold_50403
Species: RBG_16_Archaea_50_20_curated (50%)
2 2189 bp 51.76 9.06 89.63
13_1_20cm_4_scaffold_157377
Species: Methanosarcina barkeri (50%)
2 1332 bp 53.08 3.77 89.64
13_1_20cm_4_scaffold_173871
Species: Archaeoglobus sulfaticallidus (50%)
2 1274 bp 50.78 5.52 89.72
13_1_20cm_4_scaffold_53110
Species: RBG_16_Archaea_50_20_curated (100%)
2 2129 bp 53.36 4.48 89.76
13_1_20cm_4_scaffold_136800
Phylum: Bathyarchaeota (50%)
4 1417 bp 52.86 12.22 89.77
13_1_20cm_4_scaffold_252402
Species: RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated (100%)
2 1683 bp 57.10 7.16 89.84
13_1_20cm_4_scaffold_174551
Species: Mesorhizobium sp. LSJC280B00 (50%)
2 1272 bp 57.08 2.57 89.86
13_1_20cm_4_scaffold_27744
Species: RBG_16_Archaea_50_20_curated (66.67%)
6 4292 bp 50.16 4.50 89.89
13_1_20cm_4_scaffold_65194
Species: RBG_16_Euryarchaeota_67_27_curated (50%)
2 1950 bp 53.44 5.66 90.00
13_1_20cm_4_scaffold_62597
Species: RBG_19FT_COMBO_Euryarchaeota_69_17_curated (100%)
1 1983 bp 52.40 2.53 90.02
13_1_20cm_4_scaffold_27925
Order: Thermoplasmatales (50%)
4 4554 bp 51.95 10.75 90.12
13_1_20cm_4_scaffold_24486
Species: Methanoregula boonei (75%)
4 2948 bp 50.98 17.97 90.16
13_1_20cm_4_scaffold_40891
Species: RBG_16_Archaea_50_20_curated (50%)
4 3916 bp 50.38 5.06 90.17
13_1_20cm_4_scaffold_227985
Species: uncultured bacterium (50%)
2 1111 bp 56.17 3.61 90.19
13_1_20cm_4_scaffold_100085
Species: Methanoregula boonei (50%)
2 1623 bp 48.18 5.72 90.20
13_1_20cm_4_scaffold_25687
Species: RBG_19FT_COMBO_Euryarchaeota_69_17_curated (50%)
2 3977 bp 52.07 11.49 90.29
13_1_20cm_4_scaffold_108104
Species: RBG_16_Archaea_50_20_curated (66.67%)
3 1571 bp 49.59 2.40 90.32
13_1_20cm_4_scaffold_209984
Species: RBG_19FT_COMBO_Chloroflexi_50_10_curated (50%)
2 1164 bp 56.27 4.96 90.46
13_1_20cm_4_scaffold_199073
Species: R_NC10_66_22 (50%)
2 1196 bp 53.51 3.57 90.55
13_1_20cm_4_scaffold_57504
Species: Thermococcus barophilus (50%)
2 2057 bp 54.11 6.71 90.57
13_1_20cm_4_scaffold_91361
Species: RBG_13_Bathyarchaeota_46_16b_curated (50%)
2 1688 bp 53.44 4.46 90.64
Displaying items 401-450 of 883 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.