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13_1_20CM_4_Cyanobacteria_61_6

13_1_20CM_4_Bacteria_61_6
In projects: 13_1_20CM_4  |  angelo_ncbi_2016  |  meta-analysis_of_species_overlap_in_grassland_soils_environments

Consensus taxonomy: Bacteria

Metagenomic Context

Parent: 13_1_20cm_4_UNK

Properties

Avg. coverage: 6.14 Longest contig: 9.28 Kbp Bin length: 5.76 Mbp GC content: 60.73 %
Contigs count: 3730 Features count: 6540 rRNAs count: 0 tRNAs count: 17

Genome completeness

partial RP 5 / 55 MC: 1 BSCG 5 / 51 MC: 1 ASCG 2 / 38 MC: 1

Description

All Cyanos. <1 partial genome-CB

Displaying items 3451-3500 of 3730 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
13_1_20cm_4_scaffold_198008
Species: Candidatus Solibacter usitatus (50%)
2 1199 bp 54.30 3.77 100.08
13_1_20cm_4_scaffold_204446
Species: Gemmatimonadetes bacterium KBS708 (100%)
2 1181 bp 71.30 5.95 100.09
13_1_20cm_4_scaffold_42609
Species: R_Rokubacteria_73_56 (100%)
3 2338 bp 69.25 7.51 100.09
13_1_20cm_4_scaffold_208351
Species: Nostoc sp. PCC 7120 (50%)
2 1169 bp 72.03 9.23 100.09
13_1_20cm_4_scaffold_42993
Species: RBG_16_Chloroflexi_57_11_curated (50%)
2 2329 bp 70.03 10.56 100.09
13_1_20cm_4_scaffold_213621
Species: Tolypothrix campylonemoides (100%)
2 1154 bp 60.49 2.39 100.09
13_1_20cm_4_scaffold_214535
Species: [Oscillatoria] sp. PCC 6506 (50%)
2 1151 bp 63.86 6.32 100.09
13_1_20cm_4_scaffold_220597
Species: RLO_Gemmatimonadetes_68_9 (50%)
2 1133 bp 74.58 14.84 100.09
13_1_20cm_4_scaffold_222569
Species: Candidatus Solibacter usitatus (50%)
2 1127 bp 63.62 1.78 100.09
13_1_20cm_4_scaffold_225419
Species: GWC2_Gemmatimonadetes_71_10_curated (50%)
2 1118 bp 68.07 9.65 100.09
13_1_20cm_4_scaffold_225466
Species: uncultured bacterium (50%)
2 1118 bp 55.81 7.63 100.09
13_1_20cm_4_scaffold_173750
Species: Oscillatoriales cyanobacterium JSC-12 (100%)
2 2206 bp 68.54 4.32 100.09
13_1_20cm_4_scaffold_231776
Species: RBG_13_Planctomycetes_62_9_curated (50%)
2 1100 bp 69.45 11.18 100.09
13_1_20cm_4_scaffold_241137
Species: marine sediment metagenome (50%)
2 1073 bp 62.91 3.04 100.09
13_1_20cm_4_scaffold_244111
Species: Gloeobacter violaceus (50%)
2 1064 bp 69.45 4.72 100.09
13_1_20cm_4_scaffold_55511
Species: RBG_16_RIF_CHLX_69_14_curated (50%)
2 2089 bp 71.57 3.84 100.10
13_1_20cm_4_scaffold_256238
Species: Microcoleus vaginatus (50%)
2 1031 bp 50.34 3.16 100.10
13_1_20cm_4_scaffold_259635
Species: Gloeocapsa sp. PCC 7428 (50%)
2 1022 bp 59.20 8.35 100.10
13_1_20cm_4_scaffold_64093
Species: Leptolyngbya sp. PCC 7376 (50%)
2 1963 bp 68.67 3.71 100.10
13_1_20cm_4_scaffold_74312
Species: Hyalangium minutum (50%)
2 1843 bp 66.68 8.99 100.11
13_1_20cm_4_scaffold_87711
Species: Cyanothece sp. PCC 7425 (50%)
2 1717 bp 57.60 3.07 100.12
13_1_20cm_4_scaffold_99953
Species: RIFOXYB12_FULL_Lentisphaerae_65_16_curated (100%)
2 1624 bp 61.95 15.15 100.12
13_1_20cm_4_scaffold_106348
Species: Gloeobacter kilaueensis (50%)
2 1582 bp 53.60 4.44 100.13
13_1_20cm_4_scaffold_106728
Species: Gloeobacter violaceus (50%)
2 1579 bp 63.14 3.02 100.13
13_1_20cm_4_scaffold_106768
Species: RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated (50%)
2 1579 bp 66.88 5.88 100.13
13_1_20cm_4_scaffold_111075
Species: Leptolyngbya sp. PCC 7375 (50%)
2 1552 bp 68.81 5.98 100.13
13_1_20cm_4_scaffold_118981
Species: RBG_16_Deltaproteobacteria_50_11_curated (50%)
2 1507 bp 69.81 12.82 100.13
13_1_20cm_4_scaffold_130585
Species: BJP_IG2069_Chloroflexi_70_12 (50%)
2 1447 bp 69.25 10.06 100.14
13_1_20cm_4_scaffold_131708
Species: Tolypothrix sp. PCC 7601 (50%)
2 1441 bp 70.78 9.41 100.14
13_1_20cm_4_scaffold_53056
Domain: Bacteria (100%)
3 2130 bp 65.73 6.01 100.14
13_1_20cm_4_scaffold_142084
Species: Fulvivirga imtechensis (50%)
2 1393 bp 52.62 4.87 100.14
13_1_20cm_4_scaffold_146448
Species: R_Acidobacteria_65_29 (100%)
2 1375 bp 70.76 3.47 100.15
13_1_20cm_4_scaffold_147983
Species: Marinobacterium sp. AK27 (50%)
2 1369 bp 64.28 10.27 100.15
13_1_20cm_4_scaffold_150201
Species: Tolypothrix campylonemoides (50%)
2 1360 bp 52.06 5.17 100.15
13_1_20cm_4_scaffold_153894
Species: Tolypothrix campylonemoides (50%)
2 1345 bp 64.83 8.40 100.15
13_1_20cm_4_scaffold_154688
Species: Limnoraphis robusta (50%)
2 1342 bp 57.08 4.68 100.15
13_1_20cm_4_scaffold_157036
Species: Gloeobacter kilaueensis (50%)
2 1333 bp 58.59 8.10 100.15
13_1_20cm_4_scaffold_162579
Species: Bacteroides ovatus (50%)
2 1312 bp 53.05 4.97 100.15
13_1_20cm_4_scaffold_63992
Species: RBG_16_Deltaproteobacteria_50_11_curated (50%)
2 1965 bp 69.36 9.96 100.15
13_1_20cm_4_scaffold_164297
Species: Pseudanabaena biceps (50%)
2 1306 bp 56.43 4.04 100.15
13_1_20cm_4_scaffold_168861
Species: Pseudanabaena sp. PCC 7367 (50%)
2 1291 bp 59.72 2.33 100.16
13_1_20cm_4_scaffold_168948
Species: RLO_PLX_64_10 (100%)
2 1291 bp 66.77 6.42 100.16
13_1_20cm_4_scaffold_66364
Species: Gloeobacter violaceus (50%)
2 1935 bp 69.97 8.56 100.16
13_1_20cm_4_scaffold_169721
Species: Chroococcidiopsis thermalis (50%)
2 1288 bp 59.55 2.73 100.16
13_1_20cm_4_scaffold_67635
Species: R_Acidobacteria_65_29 (50%)
2 1920 bp 68.28 4.18 100.16
13_1_20cm_4_scaffold_172593
Species: Rivularia sp. PCC 7116 (50%)
2 1279 bp 70.68 11.19 100.16
13_1_20cm_4_scaffold_68640
Species: Gloeobacter kilaueensis (50%)
2 1908 bp 71.44 17.63 100.16
13_1_20cm_4_scaffold_175195
Species: Microcoleus sp. PCC 7113 (50%)
2 1270 bp 71.89 11.07 100.16
13_1_20cm_4_scaffold_179028
Species: Gloeobacter kilaueensis (100%)
2 1258 bp 58.59 3.99 100.16
13_1_20cm_4_scaffold_178890
Species: Pleurocapsa minor (50%)
2 1258 bp 65.82 9.78 100.16
Displaying items 3451-3500 of 3730 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.