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13_1_20CM_4_Cyanobacteria_61_6

13_1_20CM_4_Bacteria_61_6
In projects: 13_1_20CM_4  |  angelo_ncbi_2016  |  meta-analysis_of_species_overlap_in_grassland_soils_environments

Consensus taxonomy: Bacteria

Metagenomic Context

Parent: 13_1_20cm_4_UNK

Properties

Avg. coverage: 6.14 Longest contig: 9.28 Kbp Bin length: 5.76 Mbp GC content: 60.73 %
Contigs count: 3730 Features count: 6540 rRNAs count: 0 tRNAs count: 17

Genome completeness

partial RP 5 / 55 MC: 1 BSCG 5 / 51 MC: 1 ASCG 2 / 38 MC: 1

Description

All Cyanos. <1 partial genome-CB

Displaying items 3501-3550 of 3730 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
13_1_20cm_4_scaffold_71463
Species: Microcoleus sp. PCC 7113 (100%)
2 1875 bp 60.05 4.15 100.16
13_1_20cm_4_scaffold_181641
Species: RBG_19FT_COMBO_Nitrospirae_42_15_curated (50%)
2 1249 bp 68.78 6.23 100.16
13_1_20cm_4_scaffold_185422
Species: Streptomyces sp. AcH 505 (50%)
2 1237 bp 66.05 8.12 100.16
13_1_20cm_4_scaffold_186598
Species: RBG_19FT_COMBO_Chloroflexi_50_10_curated (50%)
2 1234 bp 62.72 4.27 100.16
13_1_20cm_4_scaffold_21945
Domain: Bacteria (100%)
3 3082 bp 70.57 18.98 100.16
13_1_20cm_4_scaffold_192546
Species: RBG_16_Gemmatimonadetes_66_8_curated (100%)
2 1216 bp 63.65 8.67 100.16
13_1_20cm_4_scaffold_200672
Species: RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated (50%)
2 1192 bp 69.55 2.32 100.17
13_1_20cm_4_scaffold_207875
Species: R_WOR_2_67_20 (50%)
2 1171 bp 69.09 6.22 100.17
13_1_20cm_4_scaffold_85019
Species: Cystobacter violaceus (50%)
2 1740 bp 59.66 9.81 100.17
13_1_20cm_4_scaffold_211841
Species: Scytonema tolypothrichoides (50%)
2 1159 bp 70.75 6.28 100.17
13_1_20cm_4_scaffold_212896
Phylum: Cyanobacteria (50%)
2 1156 bp 65.40 8.90 100.17
13_1_20cm_4_scaffold_212680
Species: Microcoleus vaginatus (50%)
2 1156 bp 68.86 4.78 100.17
13_1_20cm_4_scaffold_212975
Species: Leptolyngbya sp. PCC 7375 (50%)
2 1156 bp 71.54 5.65 100.17
13_1_20cm_4_scaffold_214976
Species: RBG_13_Chloroflexi_68_17_curated (50%)
2 1150 bp 66.78 6.33 100.17
13_1_20cm_4_scaffold_221806
Species: Gemmatimonadetes bacterium KBS708 (100%)
2 1129 bp 61.38 4.00 100.18
13_1_20cm_4_scaffold_226028
Species: Scytonema millei (50%)
2 1117 bp 52.73 4.72 100.18
13_1_20cm_4_scaffold_228941
Species: Tolypothrix campylonemoides (50%)
2 1108 bp 55.51 3.85 100.18
13_1_20cm_4_scaffold_228967
Species: Candidatus Methanoperedens nitroreducens (50%)
2 1108 bp 69.13 4.76 100.18
13_1_20cm_4_scaffold_28614
Domain: Bacteria (66.67%)
3 2764 bp 67.91 4.90 100.18
13_1_20cm_4_scaffold_230091
Species: Rubidibacter lacunae (50%)
2 1105 bp 63.44 6.36 100.18
13_1_20cm_4_scaffold_239500
Species: CG_Delta_07 (50%)
2 1078 bp 68.74 4.66 100.19
13_1_20cm_4_scaffold_241404
Species: RBG_13_Chloroflexi_50_21_curated (50%)
2 1072 bp 69.03 4.21 100.19
13_1_20cm_4_scaffold_244617
Species: Pyrinomonas methylaliphatogenes (50%)
2 1063 bp 59.36 4.01 100.19
13_1_20cm_4_scaffold_250908
Species: Streptomyces bottropensis (50%)
2 1045 bp 57.22 6.97 100.19
13_1_20cm_4_scaffold_108872
Species: Leptolyngbya sp. PCC 7375 (50%)
2 1566 bp 68.97 7.85 100.19
13_1_20cm_4_scaffold_109931
Species: RBG_19FT_COMBO_Euryarchaeota_69_17_curated (100%)
2 1560 bp 63.27 20.43 100.19
13_1_20cm_4_scaffold_109942
Species: RBG_19FT_COMBO_Euryarchaeota_69_17_curated (100%)
2 1560 bp 62.82 9.81 100.19
13_1_20cm_4_scaffold_257453
Species: Gloeobacter violaceus (50%)
2 1027 bp 58.52 6.60 100.20
13_1_20cm_4_scaffold_79429
Species: Microcoleus sp. PCC 7113 (50%)
2 3030 bp 55.02 6.21 100.20
13_1_20cm_4_scaffold_265886
Species: RBG_16_Planctomycetes_55_9_curated (50%)
2 1006 bp 55.96 2.50 100.20
13_1_20cm_4_scaffold_120273
Species: Gemmatimonadetes bacterium KBS708 (100%)
2 1500 bp 68.67 7.86 100.20
13_1_20cm_4_scaffold_268210
Species: R_Acidobacteria_67_28 (50%)
2 1000 bp 66.30 7.03 100.20
13_1_20cm_4_scaffold_120976
Species: Gloeocapsa sp. PCC 73106 (50%)
2 1497 bp 54.58 2.01 100.20
13_1_20cm_4_scaffold_122032
Species: Leptolyngbya sp. PCC 7375 (50%)
2 1491 bp 73.44 7.74 100.20
13_1_20cm_4_scaffold_124282
Species: Gloeocapsa sp. PCC 7428 (50%)
2 1479 bp 72.48 4.92 100.20
13_1_20cm_4_scaffold_129005
Species: Gloeobacter violaceus (100%)
2 1455 bp 64.67 2.24 100.21
13_1_20cm_4_scaffold_130224
Species: Gemmatimonadetes bacterium KBS708 (50%)
2 1449 bp 73.15 7.97 100.21
13_1_20cm_4_scaffold_233069
Species: Gloeocapsa sp. PCC 7428 (50%)
2 1907 bp 57.94 14.74 100.21
13_1_20cm_4_scaffold_142307
Species: Pyrinomonas methylaliphatogenes (100%)
2 1392 bp 62.79 3.79 100.22
13_1_20cm_4_scaffold_147397
Phylum: Cyanobacteria (66.67%)
3 1371 bp 71.48 4.39 100.22
13_1_20cm_4_scaffold_147568
Species: RBG_16_Acidobacteria_68_9_curated (50%)
2 1371 bp 69.15 3.66 100.22
13_1_20cm_4_scaffold_77461
Species: RBG_19FT_COMBO_Euryarchaeota_69_17_curated (100%)
2 1811 bp 63.61 12.75 100.22
13_1_20cm_4_scaffold_78012
Species: Gloeobacter violaceus (50%)
2 1805 bp 57.01 4.59 100.22
13_1_20cm_4_scaffold_78933
Species: Cyanothece sp. PCC 7425 (50%)
2 1796 bp 56.40 4.05 100.22
13_1_20cm_4_scaffold_154902
Species: Coleofasciculus chthonoplastes (50%)
2 1341 bp 68.61 5.05 100.22
13_1_20cm_4_scaffold_156568
Species: Nitrosospira sp. NpAV (50%)
2 1335 bp 68.76 3.38 100.23
13_1_20cm_4_scaffold_165573
Species: RBG_16_Anaeromyxobacter_69_14_curated (50%)
2 1302 bp 68.59 8.29 100.23
13_1_20cm_4_scaffold_166275
Species: Sandaracinus amylolyticus (50%)
2 1299 bp 69.44 9.66 100.23
13_1_20cm_4_scaffold_22911
Species: Oscillatoria nigro-viridis (50%)
2 3029 bp 62.96 3.40 100.23
13_1_20cm_4_scaffold_167281
Species: R_WWE3_40_23 (50%)
2 1296 bp 54.17 2.52 100.23
Displaying items 3501-3550 of 3730 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.