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13_1_20CM_4_Cyanobacteria_61_6

13_1_20CM_4_Bacteria_61_6
In projects: 13_1_20CM_4  |  angelo_ncbi_2016  |  meta-analysis_of_species_overlap_in_grassland_soils_environments

Consensus taxonomy: Bacteria

Metagenomic Context

Parent: 13_1_20cm_4_UNK

Properties

Avg. coverage: 6.14 Longest contig: 9.28 Kbp Bin length: 5.76 Mbp GC content: 60.73 %
Contigs count: 3730 Features count: 6540 rRNAs count: 0 tRNAs count: 17

Genome completeness

partial RP 5 / 55 MC: 1 BSCG 5 / 51 MC: 1 ASCG 2 / 38 MC: 1

Description

All Cyanos. <1 partial genome-CB

Displaying items 3551-3600 of 3730 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
13_1_20cm_4_scaffold_167398
Species: Hymenobacter sp. DG25B (50%)
2 1296 bp 54.94 3.10 100.23
13_1_20cm_4_scaffold_169112
Species: RBG_13_Nitrospirae_41_22_curated (50%)
2 1290 bp 74.88 9.92 100.23
13_1_20cm_4_scaffold_186694
Species: Bacillus subtilis (50%)
2 1233 bp 55.39 3.66 100.24
13_1_20cm_4_scaffold_98201
Class: Oscillatoriophycideae (66.67%)
3 1637 bp 70.56 9.51 100.24
13_1_20cm_4_scaffold_194968
Species: Variovorax sp. CF313 (50%)
2 1209 bp 64.93 4.78 100.25
13_1_20cm_4_scaffold_196863
Species: Moorea producens (50%)
2 1203 bp 53.53 3.55 100.25
13_1_20cm_4_scaffold_197655
Species: RBG_19FT_COMBO_Chloroflexi_62_14_curated (50%)
2 1200 bp 67.42 6.28 100.25
13_1_20cm_4_scaffold_200949
Species: Microcystis aeruginosa (50%)
2 1191 bp 65.41 3.58 100.25
13_1_20cm_4_scaffold_200758
Species: RBG_16_KB1_OP1_55_9_curated (50%)
2 1191 bp 64.32 12.22 100.25
13_1_20cm_4_scaffold_210090
Species: RLO_RIF_CHLX_71_12 (100%)
2 1164 bp 68.81 7.98 100.26
13_1_20cm_4_scaffold_115023
Species: RLO_PLX_64_10 (100%)
2 1529 bp 65.14 4.76 100.26
13_1_20cm_4_scaffold_216206
Species: Nostoc punctiforme (50%)
2 1146 bp 56.37 2.63 100.26
13_1_20cm_4_scaffold_218332
Species: Gloeobacter kilaueensis (50%)
2 1140 bp 70.18 12.99 100.26
13_1_20cm_4_scaffold_221015
Species: Oscillatoriales cyanobacterium JSC-12 (50%)
2 1131 bp 53.76 5.77 100.27
13_1_20cm_4_scaffold_121181
Species: GWA2_RIF03_38_11_curated (50%)
2 1496 bp 59.09 4.70 100.27
13_1_20cm_4_scaffold_123855
Species: bacterium UASB14 (50%)
2 1481 bp 54.29 3.56 100.27
13_1_20cm_4_scaffold_125596
Species: Calothrix parietina (50%)
2 1472 bp 66.03 10.91 100.27
13_1_20cm_4_scaffold_50427
Order: Oscillatoriales (66.67%)
3 2178 bp 67.40 5.76 100.28
13_1_20cm_4_scaffold_135950
Species: RBG_16_NC10_65_8_curated (50%)
2 1421 bp 65.17 5.12 100.28
13_1_20cm_4_scaffold_247143
Species: Cyanothece sp. PCC 7425 (50%)
2 1056 bp 64.02 3.80 100.28
13_1_20cm_4_scaffold_248075
Species: Gloeobacter kilaueensis (50%)
2 1053 bp 56.60 3.34 100.29
13_1_20cm_4_scaffold_248050
Species: Scytonema tolypothrichoides (50%)
2 1053 bp 69.90 4.29 100.29
13_1_20cm_4_scaffold_39629
Species: Crinalium epipsammum (50%)
4 3464 bp 65.27 15.00 100.29
13_1_20cm_4_scaffold_254514
Species: RBG_13_Planctomycetes_63_9_curated (50%)
2 1035 bp 59.90 4.61 100.29
13_1_20cm_4_scaffold_149828
Species: Anabaena sp. 90 (50%)
2 1361 bp 52.61 3.87 100.29
13_1_20cm_4_scaffold_261333
Species: Nostoc punctiforme (50%)
2 1017 bp 52.70 3.70 100.30
13_1_20cm_4_scaffold_262722
Species: Leptolyngbya sp. Heron Island J (50%)
2 1014 bp 55.42 2.72 100.30
13_1_20cm_4_scaffold_160614
Species: Chroococcidiopsis thermalis (50%)
2 1319 bp 69.98 9.90 100.30
13_1_20cm_4_scaffold_161460
Species: Massilia consociata (50%)
2 1316 bp 69.76 3.43 100.30
13_1_20cm_4_scaffold_172950
Species: RBG_19FT_COMBO_Aminicenantes_58_17_curated (50%)
2 1277 bp 63.74 3.54 100.31
13_1_20cm_4_scaffold_105867
Species: Chroococcidiopsis thermalis (50%)
2 1585 bp 56.40 7.92 100.32
13_1_20cm_4_scaffold_183240
Species: R_RIF_OD1_09_49_22 (50%)
2 1244 bp 70.02 7.06 100.32
13_1_20cm_4_scaffold_38941
Species: RBG_13_Chloroflexi_66_10_curated (50%)
2 2428 bp 67.75 7.75 100.33
13_1_20cm_4_scaffold_195218
Species: Nitrosococcus watsonii (50%)
2 1208 bp 50.91 2.08 100.33
13_1_20cm_4_scaffold_196015
Species: Pyrinomonas methylaliphatogenes (50%)
2 1205 bp 55.68 4.79 100.33
13_1_20cm_4_scaffold_127019
Species: RBG_19FT_COMBO_Actinobacteria_70_19_curated (100%)
2 1465 bp 70.31 3.08 100.34
13_1_20cm_4_scaffold_209297
Species: RBG_16_Deltaproteobacteria_50_11_curated (50%)
2 1166 bp 72.81 4.09 100.34
13_1_20cm_4_scaffold_211463
Species: RBG_16_RIF_WS3X_71_46_curated (50%)
2 1160 bp 65.60 2.16 100.35
13_1_20cm_4_scaffold_85720
Species: Gloeobacter violaceus (50%)
2 1734 bp 59.11 7.38 100.35
13_1_20cm_4_scaffold_219408
Species: Synechococcus sp. KORDI-49 (50%)
2 1136 bp 69.81 3.31 100.35
13_1_20cm_4_scaffold_229624
Species: Chroococcidiopsis thermalis (50%)
2 1106 bp 61.39 4.08 100.36
13_1_20cm_4_scaffold_302703
Phylum: Cyanobacteria (66.67%)
3 1644 bp 69.53 4.73 100.37
13_1_20cm_4_scaffold_236805
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (50%)
2 1085 bp 65.90 3.47 100.37
13_1_20cm_4_scaffold_102350
Domain: Bacteria (66.67%)
3 1608 bp 69.09 7.34 100.37
13_1_20cm_4_scaffold_243142
Species: RBG_16_Euryarchaeota_68_13_curated (100%)
2 1067 bp 65.79 14.58 100.37
13_1_20cm_4_scaffold_73613
Species: RBG_16_Planctomycetes_55_9_curated (50%)
2 1850 bp 57.19 5.43 100.38
13_1_20cm_4_scaffold_265425
Species: Gloeobacter violaceus (50%)
2 1007 bp 67.13 8.23 100.40
13_1_20cm_4_scaffold_266562
Species: Leptolyngbya sp. PCC 7375 (50%)
2 1004 bp 61.45 6.75 100.40
13_1_20cm_4_scaffold_181750
Species: Cyanothece sp. PCC 7425 (50%)
2 1249 bp 52.20 5.02 100.40
13_1_20cm_4_scaffold_62493
Species: Microcoleus vaginatus (50%)
2 2743 bp 59.61 8.60 100.40
Displaying items 3551-3600 of 3730 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.