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13_1_20cm_4_scaffold_1113

Search features with annotation key words

Displaying 30 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_1113_1
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(3..626)
DNA (624bp) protein (208aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A719_GEMAT
Uncharacterized protein {ECO:0000313|EMBL:AHG88939.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
hypothetical protein
13_1_20cm_4_scaffold_1113_2
unknown

Not on your lists

comp(724..918)
DNA (195bp) protein (65aa)

This feature has no annotations

13_1_20cm_4_scaffold_1113_trna_1
unknown

Not on your lists

comp(922..995)
DNA (74bp)
transferRNA
13_1_20cm_4_scaffold_1113_3
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(1126..1527)
DNA (402bp) protein (134aa)
Sensory box sensor histidine kinase/response regulator n=1 Tax=Dehalococcoides ethenogenes (strain 195) RepID=Q3Z7R3_DEHE1
PAS/PAC sensor hybrid histidine kinase Tax=RBG_16_Gemmatimonadetes_66_8_curated
sensor histidine kinase/response regulator
13_1_20cm_4_scaffold_1113_4
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(1524..2321)
DNA (798bp) protein (266aa)
AraC family transcriptional regulator n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A3G9_GEMAT
AraC family transcriptional regulator Tax=RBG_16_Gemmatimonadetes_66_8_curated
Helix-turn-helix, AraC domain-containing protein
13_1_20cm_4_scaffold_1113_5
unknown

Not on your lists

2439..2570
DNA (132bp) protein (44aa)

This feature has no annotations

13_1_20cm_4_scaffold_1113_6
unknown

Not on your lists

comp(2576..3844)
DNA (1269bp) protein (423aa)

This feature has no annotations

13_1_20cm_4_scaffold_1113_7
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(4006..4437)
DNA (432bp) protein (144aa)
hypothetical protein n=1 Tax=Rhizobium loti RepID=UPI00035E6308
Cytochrome c class I {ECO:0000313|EMBL:AHG91609.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
cytochrome c class I
13_1_20cm_4_scaffold_1113_8
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(4419..6146)
DNA (1728bp) protein (576aa)
Pyrrolo-quinoline quinone n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01R95_SOLUE
PQQ-dependent dehydrogenase, methanol/ethanol family {ECO:0000313|EMBL:AHG91607.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PQQ-dependent dehydrogenase, methanol/ethanol family
13_1_20cm_4_scaffold_1113_9
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists


comp(6160..6798)
DNA (639bp) protein (213aa)
nucleoside-triphosphatase rdgB (EC:3.6.1.15); K02428 dITP/XTP pyrophosphatase [EC:3.6.1.19] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
nucleoside-triphosphatase rdgB (EC:3.6.1.15)
Non-canonical purine NTP pyrophosphatase n=1 Tax=Thermaerobacter subterraneus DSM 13965 RepID=K6PPQ9_9FIRM
13_1_20cm_4_scaffold_1113_10
Desulfobacca acetoxidans, Desulfobacca, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6798..7205)
DNA (408bp) protein (136aa)
RfaE bifunctional protein n=1 Tax=Desulfobacca acetoxidans (strain ATCC 700848 / DSM 11109 / ASRB2) RepID=F2NI68_DESAR
RfaE bifunctional protein {ECO:0000313|EMBL:AEB09837.1}; TaxID=880072 species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophaceae; Desulfobacca.;" source="Desulfobacca a
rfaE bifunctional protein
13_1_20cm_4_scaffold_1113_11
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(7283..7666)
DNA (384bp) protein (128aa)
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
13_1_20cm_4_scaffold_1113_12
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(7660..8073)
DNA (414bp) protein (138aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8Q1_GEMAT
hypothetical protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
Rare lipoprotein B
13_1_20cm_4_scaffold_1113_13
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(8221..8694)
DNA (474bp) protein (158aa)
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
13_1_20cm_4_scaffold_1113_14
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(8724..11609)
DNA (2886bp) protein (962aa)
WD40 domain protein beta Propeller Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
WD40 domain protein beta propeller id=3795774 bin=GWC2_Ignavibacteria_56_12 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWC2_Ignavibacteria_56_12 organism_group=Ignavibacteria organism_desc=Larger genome rbh
WD40 domain protein beta Propeller
13_1_20cm_4_scaffold_1113_15
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(11606..12445)
DNA (840bp) protein (280aa)
Peptidyl-prolyl cis-trans isomerase (Rotamase)-cyclophilin family n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LI53_CHLTF
cyclophilin type peptidyl-prolyl cis-trans isomerase Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
cyclophilin type peptidyl-prolyl cis-trans isomerase
13_1_20cm_4_scaffold_1113_16
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(12432..13547)
DNA (1116bp) protein (372aa)
PBS lyase HEAT domain protein repeat-containing protein n=1 Tax=Roseiflexus sp. (strain RS-1) RepID=A5UU23_ROSS1
HEAT repeat-containing protein Tax=GWC2_Gemmatimonadetes_71_10_curated
hypothetical protein
13_1_20cm_4_scaffold_1113_17
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(13501..13755)
DNA (255bp) protein (85aa)
hypothetical protein; K07107 acyl-CoA thioester hydrolase [EC:3.1.2.-] Tax=RBG_16_Gemmatimonadetes_66_8_curated
13_1_20cm_4_scaffold_1113_18
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

13816..14544
DNA (729bp) protein (243aa)
lpxH; UDP-2,3-diacylglucosamine hydrolase (EC:3.6.1.-); K03269 UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54] Tax=RBG_16_Gemmatimonadetes_66_8_curated
metallophosphoesterase; K03269 UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54] id=24407690 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=TA06 genus=TA06 taxon_order=TA06 taxon_class=TA06 phylum=TA06 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Calcineurin-like phosphoesterase superfamily domain protein
13_1_20cm_4_scaffold_1113_19
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(14558..15355)
DNA (798bp) protein (266aa)
glutamate racemase; K01776 glutamate racemase [EC:5.1.1.3] Tax=GWC2_Gemmatimonadetes_71_10_curated
Glutamate racemase n=1 Tax=Desulfovibrio sp. FW1012B RepID=G7Q8X8_9DELT
Glutamate racemase
13_1_20cm_4_scaffold_1113_20
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(15352..15861)
DNA (510bp) protein (170aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
13_1_20cm_4_scaffold_1113_21
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(15858..16682)
DNA (825bp) protein (275aa)
Diacylglycerol kinase catalytic region n=2 Tax=Chloroflexus RepID=A9WJK5_CHLAA
diacylglycerol kinase catalytic subunit; K07029 Tax=GWC2_Gemmatimonadetes_71_10_curated
diacylglycerol kinase catalytic subunit
13_1_20cm_4_scaffold_1113_22
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(17182..17538)
DNA (357bp) protein (119aa)
Tax=GWC2_Gemmatimonadetes_71_10_curated
13_1_20cm_4_scaffold_1113_23
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

17723..18889
DNA (1167bp) protein (389aa)
multi-sensor hybrid histidine kinase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
PAS/PAC sensor hybrid histidine kinase id=4942499 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
multi-sensor hybrid histidine kinase
13_1_20cm_4_scaffold_1113_24
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(19078..19470)
DNA (393bp) protein (131aa)
hypothetical protein n=1 Tax=Candidatus Poribacteria sp. WGA-4E RepID=UPI0003635BB9
Uncharacterized protein {ECO:0000313|EMBL:KIC94340.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacte
hypothetical protein
13_1_20cm_4_scaffold_1113_25
Leptolyngbya sp. PCC 7375, Leptolyngbya, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(19479..20231)
DNA (753bp) protein (251aa)
Tetratricopeptide repeat protein n=1 Tax=Leptolyngbya sp. PCC 7375 RepID=K9F0G9_9CYAN
Tetratricopeptide repeat protein {ECO:0000313|EMBL:EKV02840.1}; Flags: Precursor;; TaxID=102129 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Leptolyngbya.;" source="Leptol
TPR repeat-containing protein kinase
13_1_20cm_4_scaffold_1113_26
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

20392..21267
DNA (876bp) protein (292aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI0003817712
Uncharacterized protein {ECO:0000313|EMBL:AHG88149.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
hypothetical protein
13_1_20cm_4_scaffold_1113_27
RLO_Betaproteobacteria_68_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21295..21462)
DNA (168bp) protein (56aa)
Putative uncharacterized protein n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IJG2_KORVE
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_19_curated
hypothetical protein
13_1_20cm_4_scaffold_1113_28
unknown

Not on your lists

comp(21528..22220)
DNA (693bp) protein (231aa)

This feature has no annotations

13_1_20cm_4_scaffold_1113_29
unknown

Not on your lists

comp(22217..22657)
DNA (441bp) protein (147aa)

This feature has no annotations

Displaying 30 items

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