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13_1_20cm_4_scaffold_232

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Displaying 30 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_232_1
unknown

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1..1452
DNA (1452bp) protein (484aa)

This feature has no annotations

13_1_20cm_4_scaffold_232_2
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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1605..2909
DNA (1305bp) protein (435aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8T2_GEMAT
hypothetical protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
hypothetical protein
13_1_20cm_4_scaffold_232_3
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

2906..4240
DNA (1335bp) protein (445aa)
GTPase Der n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=DER_GEMAT
hypothetical protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
engA; GTP-binding protein EngA
13_1_20cm_4_scaffold_232_4
RLO_RIF05_58_11, RIF5, Bacteria

Not on your lists

4237..4854
DNA (618bp) protein (206aa)
membrane protein; K08591 glycerol-3-phosphate acyltransferase PlsY [EC:2.3.1.15] Tax=RIFCSPLOWO2_12_FULL_RIF05_58_11_curated
Glycerol-3-phosphate acyltransferase n=1 Tax=Leptospira vanthielii serovar Holland str. Waz Holland = ATCC 700522 RepID=N1W1F9_9LEPT
glycerol-3-phosphate acyltransferase
13_1_20cm_4_scaffold_232_5
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

4868..5896
DNA (1029bp) protein (343aa)
gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+); K00057 glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94] Tax=RBG_16_Gemmatimonadetes_66_8_curated
Glycerol-3-phosphate dehydrogenase [NAD(P)+] n=1 Tax=Geobacter sp. (strain M18) RepID=E8WJD9_GEOS8
Glycerol-3-phosphate dehydrogenase [NAD(P)+]
13_1_20cm_4_scaffold_232_6
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

5893..6270
DNA (378bp) protein (126aa)
MerR family transcriptional regulator n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8T6_GEMAT
MerR family transcriptional regulator Tax=RBG_16_Gemmatimonadetes_66_8_curated
regulatory protein MerR
13_1_20cm_4_scaffold_232_7
RBG_16_Planctomycetes_59_8_curated, Planctomycetes, Bacteria

Not on your lists

6254..6955
DNA (702bp) protein (234aa)
glycosyltransferase (EC:2.4.-.-)
Glycosyltransferase n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9GXY1_SORC5
Glycosyltransferase Tax=RBG_16_Planctomycetes_59_8_curated
13_1_20cm_4_scaffold_232_8
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

6952..7701
DNA (750bp) protein (250aa)
surE; 5'-nucleotidase SurE (EC:3.1.3.5); K03787 5'-nucleotidase [EC:3.1.3.5] Tax=RBG_16_Gemmatimonadetes_66_8_curated
surE; 5'-nucleotidase SurE (EC:3.1.3.5)
5'-nucleotidase SurE n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=SURE_GEMAT
13_1_20cm_4_scaffold_232_9
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

7683..8351
DNA (669bp) protein (223aa)
pcm; protein-L-isoaspartate O-methyltransferase (EC:2.1.1.77); K00573 protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Protein-L-isoaspartate O-methyltransferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8T8_GEMAT
Protein-L-isoaspartate O-methyltransferase
13_1_20cm_4_scaffold_232_10
Geobacter bemidjiensis, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8344..8985
DNA (642bp) protein (214aa)
Membrane protein DedA n=1 Tax=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) RepID=B5ED53_GEOBB
Membrane protein DedA {ECO:0000313|EMBL:ACH37639.1}; TaxID=404380 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter bemidjiensi
membrane protein DedA
13_1_20cm_4_scaffold_232_11
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

8989..9261
DNA (273bp) protein (91aa)
acylphosphatase; K01512 acylphosphatase [EC:3.6.1.7] Tax=GWC2_Gemmatimonadetes_71_10_curated
Acylphosphatase n=3 Tax=Desulfovibrio vulgaris RepID=ACYP_DESVH
acylphosphatase
13_1_20cm_4_scaffold_232_12
Cystobacter fuscus, Cystobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9277..9813
DNA (537bp) protein (179aa)
Adenine phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00004, ECO:0000256|SAAS:SAAS00084274}; Short=APRT {ECO:0000256|HAMAP-Rule:MF_00004};; EC=2.4.2.7 {ECO:0000256|HAMAP-Rule:MF_00004, ECO:0000
apt; adenine phosphoribosyltransferase (EC:2.4.2.7)
Adenine phosphoribosyltransferase n=1 Tax=Cystobacter fuscus DSM 2262 RepID=S9QN48_9DELT
13_1_20cm_4_scaffold_232_trna_1
unknown

Not on your lists

9836..9909
DNA (74bp)
transferRNA
13_1_20cm_4_scaffold_232_13
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

9974..10654
DNA (681bp) protein (227aa)
hypothetical protein n=1 Tax=Pontibacter roseus RepID=UPI00037C084F
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
13_1_20cm_4_scaffold_232_14
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(10727..11527)
DNA (801bp) protein (267aa)
dapE; diaminopimelate epimerase (EC:5.1.1.7); K01778 diaminopimelate epimerase [EC:5.1.1.7] Tax=RBG_16_Gemmatimonadetes_66_8_curated
Diaminopimelate epimerase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=DAPF_GEMAT
Diaminopimelate epimerase
13_1_20cm_4_scaffold_232_15
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(11548..12270)
DNA (723bp) protein (241aa)
putative polyprenol-phosphate mannosyltransferase; K00721 dolichol-phosphate mannosyltransferase [EC:2.4.1.83] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Putative polyprenol-phosphate mannosyltransferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8U4_GEMAT
putative polyprenol-phosphate mannosyltransferase
13_1_20cm_4_scaffold_232_16
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(12263..14614)
DNA (2352bp) protein (784aa)
Hypothetical membrane protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A770_GEMAT rbh
hypothetical membrane protein Tax=GWC2_Gemmatimonadetes_71_10_curated
hypothetical membrane protein
13_1_20cm_4_scaffold_232_17
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(14601..15515)
DNA (915bp) protein (305aa)
Hypothetical membrane protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8U6_GEMAT
hypothetical membrane protein; K07027 Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
hypothetical membrane protein
13_1_20cm_4_scaffold_232_18
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(15508..16299)
DNA (792bp) protein (264aa)
glycosyltransferase (EC:2.4.-.-) Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
glycosyltransferase (EC:2.4.-.-)
Glycosyltransferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8U7_GEMAT
13_1_20cm_4_scaffold_232_19
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(16296..17099)
DNA (804bp) protein (268aa)
hypothetical protein; K07027 Tax=RBG_16_Gemmatimonadetes_66_8_curated
Methyltransferase type 11 id=2867555 bin=GWF2_Planctomycete_41_51 species=Desulfomicrobium baculatum genus=Desulfomicrobium taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Planctomycete_41_51 organism_group=Planctomycetes organism_desc=a211
type 11 methyltransferase
13_1_20cm_4_scaffold_232_20
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(17183..18142)
DNA (960bp) protein (320aa)
putative glycosyltransferase (EC:2.4.-.-) Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Putative glycosyltransferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8U8_GEMAT
glycosyl transferase family 2
13_1_20cm_4_scaffold_232_21
RBG_16_Acidobacteria_68_9_curated, Acidobacteria, Bacteria

Not on your lists

comp(18139..19596)
DNA (1458bp) protein (486aa)
RNA polymerase sigma factor n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8U9_GEMAT
rpoN; RNA polymerase sigma factor; K03092 RNA polymerase sigma-54 factor Tax=RBG_16_Acidobacteria_68_9_curated
RNA polymerase sigma-54 factor, RpoN
13_1_20cm_4_scaffold_232_22
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(19593..20828)
DNA (1236bp) protein (412aa)
putative ABC transporter ATP-binding protein; K06861 lipopolysaccharide export system ATP-binding protein [EC:3.6.3.-] Tax=GWC2_Gemmatimonadetes_71_10_curated
Putative ABC transporter ATP-binding protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8V0_GEMAT
ABC transporter related protein
13_1_20cm_4_scaffold_232_23
RBG_16_Acidobacteria_68_9_curated, Acidobacteria, Bacteria

Not on your lists

comp(20825..22156)
DNA (1332bp) protein (444aa)
Marine sediment metagenome DNA, contig: S01H1_S04962 Tax=RBG_16_Acidobacteria_68_9_curated
13_1_20cm_4_scaffold_232_24
RBG_16_Acidobacteria_68_9_curated, Acidobacteria, Bacteria

Not on your lists

comp(22153..22671)
DNA (519bp) protein (173aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8V2_GEMAT
hypothetical protein Tax=RBG_16_Acidobacteria_68_9_curated
protein of unknown function DUF1239
13_1_20cm_4_scaffold_232_25
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(22637..23581)
DNA (945bp) protein (315aa)
kdsD; arabinose 5-phosphate isomerase (EC:5.3.1.13); K06041 arabinose-5-phosphate isomerase [EC:5.3.1.13] Tax=GWC2_Gemmatimonadetes_71_10_curated
Arabinose 5-phosphate isomerase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8V3_GEMAT
KpsF/GutQ family protein
13_1_20cm_4_scaffold_232_26
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(23550..24122)
DNA (573bp) protein (191aa)
kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (EC:3.1.3.45); K03270 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45] Tax=GWC2_Gemmatimonadetes_71_1
kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (EC:3.1.3.45)
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8V4_GEMAT
13_1_20cm_4_scaffold_232_27
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(24258..25070)
DNA (813bp) protein (271aa)
kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (EC:2.5.1.55); K01627 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55] Tax=GWC2_Gemmatimonadetes_71_10_curated
kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (EC:2.5.1.55)
2-dehydro-3-deoxyphosphooctonate aldolase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8V5_GEMAT
13_1_20cm_4_scaffold_232_28
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(25074..26744)
DNA (1671bp) protein (557aa)
pyrG; CTP synthetase (EC:6.3.4.2); K01937 CTP synthase [EC:6.3.4.2] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
CTP synthase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8V6_GEMAT
CTP synthase
13_1_20cm_4_scaffold_232_29
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

comp(26836..27120)
DNA (285bp) protein (95aa)
DNA repair protein RecN n=1 Tax=Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 / NCIMB 10081) RepID=D1A1P9_THECD
DNA repair protein RecN; K03631 DNA repair protein RecN (Recombination protein N) Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
DNA repair protein RecN
Displaying 30 items

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