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13_1_20cm_4_scaffold_1029

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Displaying 18 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_1029_1
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

3..326
DNA (324bp) protein (108aa)
hypothetical protein; K09703 hypothetical protein Tax=GWA2_Rokubacteria_70_23_curated
Uncharacterized protein id=4565334 bin=GWC2_Methylomirabilis_70_24 species=Rhizobium sp. CF080 genus=Rhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Protein of hypothetical function DUF917
13_1_20cm_4_scaffold_1029_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

323..1867
DNA (1545bp) protein (515aa)
hydantoinase A Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Hydantoinase A id=4565333 bin=GWC2_Methylomirabilis_70_24 species=Azorhizobium caulinodans genus=Azorhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good rbh
hydantoinase A
13_1_20cm_4_scaffold_1029_3
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(1864..2142)
DNA (279bp) protein (93aa)
hypothetical protein; K14591 protein AroM Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
AroM protein id=4565337 bin=GWC2_Methylomirabilis_70_24 species=Anaerobaculum hydrogeniformans genus=Anaerobaculum taxon_order=Synergistales taxon_class=Synergistia phylum=Synergistetes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
aroM; protein aroM
13_1_20cm_4_scaffold_1029_4
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(2136..2378)
DNA (243bp) protein (81aa)
hypothetical protein; K14591 protein AroM Tax=GWA2_Rokubacteria_70_23_curated
AroM protein id=4565337 bin=GWC2_Methylomirabilis_70_24 species=Anaerobaculum hydrogeniformans genus=Anaerobaculum taxon_order=Synergistales taxon_class=Synergistia phylum=Synergistetes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
hypothetical protein
13_1_20cm_4_scaffold_1029_5
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

2446..4419
DNA (1974bp) protein (658aa)
dehydrogenase, E1 component; K11381 2-oxoisovalerate dehydrogenase E1 component [EC:1.2.4.4] Tax=GWA2_Rokubacteria_70_23_curated
Dehydrogenase E1 component id=4009634 bin=GWC2_Methylomirabilis_70_24 species=Mesorhizobium metallidurans genus=Mesorhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
dehydrogenase, E1 component
13_1_20cm_4_scaffold_1029_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

4523..5365
DNA (843bp) protein (281aa)
iron permease FTR1; K07243 high-affinity iron transporter Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
iron permease FTR1; K07243 high-affinity iron transporter id=14630789 bin=bin9_gal15 species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin9_gal15 organism_group=GAL15
high-affinity Fe2+/Pb2+ permease
13_1_20cm_4_scaffold_1029_7
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(5370..6767)
DNA (1398bp) protein (466aa)
long-chain-fatty-acid--CoA ligase (EC:6.2.1.3) Tax=GWA2_Rokubacteria_70_23_curated
Long-chain-fatty-acid--CoA ligase id=3021531 bin=GWF2_Methylomirabilis_70_14 species=Modestobacter marinus genus=Modestobacter taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
fadD; fatty-acid-CoA ligase
13_1_20cm_4_scaffold_1029_8
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(6773..8128)
DNA (1356bp) protein (452aa)
UbiD family decarboxylase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
UbiD decarboxylase family protein id=3021522 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Desulfosporosinus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
UbiD family decarboxylase
13_1_20cm_4_scaffold_1029_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(8186..8650)
DNA (465bp) protein (155aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=3430999 bin=GWA2_Methylomirabilis_73_35 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_20cm_4_scaffold_1029_10
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8703..10364
DNA (1662bp) protein (554aa)
2,3-dihydroxybenzoate-AMP ligase; K02363 2,3-dihydroxybenzoate-AMP ligase [EC:2.7.7.58] Tax=RBG_16_Betaproteobacteria_64_18_curated
AMP-dependent synthetase and ligase n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3FAS2_CONWI rbh
AMP-dependent synthetase and ligase
13_1_20cm_4_scaffold_1029_11
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

10361..10615
DNA (255bp) protein (85aa)
phenylacetic acid degradation protein paaA Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
phenylacetic acid degradation protein paaA id=14627178 bin=bin7_NC10_sister species=Frankia alni genus=Frankia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin7_NC10_sister organism_group=NC10
13_1_20cm_4_scaffold_1029_12
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

10612..11439
DNA (828bp) protein (276aa)
phenylacetic acid degradation protein paaA Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
phenylacetic acid degradation protein paaA id=14627178 bin=bin7_NC10_sister species=Frankia alni genus=Frankia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin7_NC10_sister organism_group=NC10
phenylacetic acid degradation protein paaA
13_1_20cm_4_scaffold_1029_13
unknown

Not on your lists

11440..11637
DNA (198bp) protein (66aa)

This feature has no annotations

13_1_20cm_4_scaffold_1029_14
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11697..12494
DNA (798bp) protein (266aa)
2OG-Fe(II) oxygenase n=1 Tax=Marinobacter sp. BSs20148 RepID=M1F9U2_9ALTE rbh
2OG-Fe(II) oxygenase {ECO:0000313|EMBL:ETW97855.1}; TaxID=1429438 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
2OG-Fe(II) oxygenase
13_1_20cm_4_scaffold_1029_15
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(12497..13009)
DNA (513bp) protein (171aa)
putative sensor histidine kinase Tax=GWA2_Rokubacteria_70_23_curated
Putative sensor histidine kinase id=4194125 bin=GWC2_Methylomirabilis_70_24 species=Azospirillum lipoferum genus=Azospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Crp/Fnr family transcriptional regulator
13_1_20cm_4_scaffold_1029_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(13038..14045)
DNA (1008bp) protein (336aa)
putative TIM-barrel fold metal-dependent hydrolase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
2-amino-3-carboxymuconate-6-semialdehyde decarboxylase id=4770810 bin=GWA2_Methylomirabilis_73_35 species=Mycobacterium xenopi genus=Mycobacterium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
2-amino-3-carboxymuconate-6-semialdehyde decarboxylase
13_1_20cm_4_scaffold_1029_17
unknown

Not on your lists

comp(14051..14413)
DNA (363bp) protein (121aa)

This feature has no annotations

13_1_20cm_4_scaffold_1029_18
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(14448..15827)
DNA (1380bp) protein (460aa)
hypothetical protein; K01652 acetolactate synthase I/II/III large subunit [EC:2.2.1.6] Tax=CSP1_6_Rokubacteria
hypothetical protein; K01652 acetolactate synthase I/II/III large subunit [EC:2.2.1.6] id=14626323 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Poribacteria tax=bin7_NC10_sister organism_group=NC10
acetolactate synthase catalytic subunit (EC:2.2.1.6)
Displaying 18 items

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