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13_1_20cm_4_scaffold_108

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Displaying items 1-30 of 77 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_108_1
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(40..642)
DNA (603bp) protein (201aa)
elongation factor Ts Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Elongation factor Ts id=2265662 bin=GWA2_Methylomirabilis_73_35 species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
tsf; elongation factor Ts
13_1_20cm_4_scaffold_108_2
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists


comp(647..1408)
DNA (762bp) protein (254aa)
30S ribosomal protein S2; K02967 small subunit ribosomal protein S2 Tax=GWA2_Rokubacteria_73_35_curated
30S ribosomal protein S2 id=2265661 bin=GWA2_Methylomirabilis_73_35 species=Salimicrobium sp. MJ3 genus=Salimicrobium taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rpsB; 30S ribosomal protein S2
13_1_20cm_4_scaffold_108_3
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(1491..2735)
DNA (1245bp) protein (415aa)
arginine biosynthesis bifunctional protein ArgJ (EC:2.3.1.1); K00620 glutamate N-acetyltransferase / amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_cur
Arginine biosynthesis bifunctional protein ArgJ id=2265660 bin=GWA2_Methylomirabilis_73_35 species=Thermacetogenium phaeum genus=Thermacetogenium taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ArgJ; N-acetylglutamate synthase
13_1_20cm_4_scaffold_108_4
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(2735..3784)
DNA (1050bp) protein (350aa)
argC; N-acetyl-gamma-glutamyl-phosphate reductase (EC:1.2.1.38); K00145 N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38] Tax=GWA2_Rokubacteria_73_35_curated
argC; n-acetyl-gamma-glutamyl-phosphate reductase (EC:1.2.1.38)
N-acetyl-gamma-glutamyl-phosphate reductase id=2265658 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_108_5
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists


comp(3801..4196)
DNA (396bp) protein (132aa)
30S ribosomal protein S9; K02996 small subunit ribosomal protein S9 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
30S ribosomal protein S9 id=2265656 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Chloracidobacterium thermophilum genus=Candidatus Chloracidobacterium taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
30S ribosomal protein S9
13_1_20cm_4_scaffold_108_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


comp(4196..4651)
DNA (456bp) protein (152aa)
50S ribosomal protein L13; K02871 large subunit ribosomal protein L13 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
50S ribosomal protein L13 id=2265654 bin=GWA2_Methylomirabilis_73_35 species=Bacillus azotoformans genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
50S ribosomal protein L13
13_1_20cm_4_scaffold_108_7
GWA2_Elusimicrobia_69_24_curated, Elusimicrobia, Bacteria

Not on your lists

comp(4735..5949)
DNA (1215bp) protein (405aa)
G-D-S-L family lipolytic protein Tax=GWA2_Elusimicrobia_69_24_curated
Putative uncharacterized protein id=4829170 bin=GWC2_Methylomirabilis_70_16 species=Planctomyces maris genus=Planctomyces taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
lipolytic protein G-D-S-L family
13_1_20cm_4_scaffold_108_8
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(5925..6581)
DNA (657bp) protein (219aa)
nth; endonuclease III (EC:4.2.99.18) Tax=CSP1_6_Rokubacteria
nth; endonuclease III (EC:4.2.99.18) id=14625396 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
nth; endonuclease III (EC:4.2.99.18)
13_1_20cm_4_scaffold_108_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(6578..8689)
DNA (2112bp) protein (704aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=2265650 bin=GWA2_Methylomirabilis_73_35 species=Caldilinea aerophila genus=Caldilinea taxon_order=Caldilineales taxon_class=Caldilineae phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_108_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(8722..9441)
DNA (720bp) protein (240aa)
methyltransferase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Methyltransferase id=2265648 bin=GWA2_Methylomirabilis_73_35 species=Cupriavidus necator genus=Cupriavidus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_20cm_4_scaffold_108_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(9447..9872)
DNA (426bp) protein (142aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PBV3_9BACT
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein
13_1_20cm_4_scaffold_108_12
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(9869..10888)
DNA (1020bp) protein (340aa)
aspartate aminotransferase Tax=GWA2_Rokubacteria_73_35_curated
Aminotransferase class I and II id=2265644 bin=GWA2_Methylomirabilis_73_35 species=Desulfatibacillum alkenivorans genus=Desulfatibacillum taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
aspartate aminotransferase
13_1_20cm_4_scaffold_108_13
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(10885..11679)
DNA (795bp) protein (265aa)
glycosyl transferase family 2 protein (EC:2.4.1.-); K00729 dolichyl-phosphate beta-glucosyltransferase [EC:2.4.1.117] Tax=GWA2_Rokubacteria_73_35_curated
glycosyl transferase family 2 protein (EC:2.4.1.-)
Glycosyl transferase, family 2 id=2265642 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_108_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(11712..13139)
DNA (1428bp) protein (476aa)
malate dehydrogenase; K00027 malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
malate dehydrogenase (EC:1.1.1.38)
Malate dehydrogenase (Oxaloacetate decarboxylating) id=4153740 bin=GWC2_Methylomirabilis_70_16 species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10 rbh
13_1_20cm_4_scaffold_108_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

13464..14957
DNA (1494bp) protein (498aa)
rpoD; RNA polymerase sigma factor rpoD; K03086 RNA polymerase primary sigma factor Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
RNA polymerase sigma factor id=3388592 bin=GWC2_Methylomirabilis_70_24 species=Plesiocystis pacifica genus=Plesiocystis taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good rbh
rpoD; RNA polymerase sigma factor rpoD
13_1_20cm_4_scaffold_108_16
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(15032..16585)
DNA (1554bp) protein (518aa)
propionyl-CoA carboxylase (EC:6.4.1.3) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
propionyl-CoA carboxylase (EC:6.4.1.3) id=14625386 bin=bin7_NC10_sister species=Conexibacter woesei genus=Conexibacter taxon_order=Solirubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin7_NC10_sister organism_group=NC10 rbh
propionyl-CoA carboxylase (EC:6.4.1.3)
13_1_20cm_4_scaffold_108_17
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(16588..17127)
DNA (540bp) protein (180aa)
DinB family protein Tax=CSP1_6_Rokubacteria
DinB family protein id=14625385 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
DinB family protein
13_1_20cm_4_scaffold_108_18
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(17152..17670)
DNA (519bp) protein (173aa)
DinB family protein Tax=GWA2_Rokubacteria_70_23_curated
DinB family protein id=14625385 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_20cm_4_scaffold_108_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(17680..17895)
DNA (216bp) protein (72aa)
biotin/lipoic acid binding domain-containing protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
biotin/lipoyl attachment domain-containing protein id=14625384 bin=bin7_NC10_sister species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
biotin/lipoyl attachment domain-containing protein
13_1_20cm_4_scaffold_108_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(17888..19183)
DNA (1296bp) protein (432aa)
biotin carboxylase (EC:6.3.4.14 6.4.1.1); K01961 acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Carbamoyl-phosphate synthase L chain ATP-binding protein id=4748227 bin=GWA2_Methylomirabilis_73_35 species=Kyrpidia tusciae genus=Kyrpidia taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Carbamoyl-phosphate synthase L chain ATP-binding protein
13_1_20cm_4_scaffold_108_21
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(19234..20193)
DNA (960bp) protein (320aa)
hypothetical protein Tax=GWA2_Rokubacteria_70_23_curated
Uncharacterized protein id=3782407 bin=GWF2_Methylomirabilis_70_14 species=Ilumatobacter coccineus genus=Ilumatobacter taxon_order=Acidimicrobiales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_20cm_4_scaffold_108_22
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(20203..20958)
DNA (756bp) protein (252aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative uncharacterized protein id=4375090 bin=GWC2_Methylomirabilis_70_24 species=Ilumatobacter coccineus genus=Ilumatobacter taxon_order=Acidimicrobiales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
hypothetical protein
13_1_20cm_4_scaffold_108_23
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(20968..22137)
DNA (1170bp) protein (390aa)
dinB; DNA polymerase IV, devoid of proofreading, damage-inducible protein P (EC:2.7.7.7) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
dinB; DNA polymerase IV, devoid of proofreading, damage-inducible protein P (EC:2.7.7.7) id=14625377 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
dinB; DNA polymerase IV, devoid of proofreading, damage-inducible protein P (EC:2.7.7.7)
13_1_20cm_4_scaffold_108_24
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(22193..22783)
DNA (591bp) protein (197aa)
metal dependent phosphohydrolase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
metal dependent phosphohydrolase id=14625376 bin=bin7_NC10_sister species=Kyrpidia tusciae genus=Kyrpidia taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
metal dependent phosphohydrolase
13_1_20cm_4_scaffold_108_25
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(22780..23445)
DNA (666bp) protein (222aa)
cysE; serine acetyltransferase (EC:2.3.1.30) Tax=CSP1_6_Rokubacteria
cysE; serine acetyltransferase (EC:2.3.1.30) id=14625374 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
cysE; serine acetyltransferase (EC:2.3.1.30)
13_1_20cm_4_scaffold_108_26
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(23438..23761)
DNA (324bp) protein (108aa)
FeS cluster assembly scaffold protein NifU; K04488 nitrogen fixation protein NifU and related proteins Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Cysteine desulfurase NifS id=4848471 bin=GWA2_Methylomirabilis_73_35 species=Desulfotomaculum gibsoniae genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
FeS cluster assembly scaffold protein NifU
13_1_20cm_4_scaffold_108_27
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(23815..24831)
DNA (1017bp) protein (339aa)
cysteine desulfurase (EC:2.8.1.7); K04487 cysteine desulfurase [EC:2.8.1.7] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
iscS; cysteine desulfurase (EC:2.8.1.7)
Cysteine desulfurase id=4206292 bin=GWF2_Methylomirabilis_70_14 species=Mahella australiensis genus=Mahella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_108_28
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

24874..25197
DNA (324bp) protein (108aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative uncharacterized protein id=3714008 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Poribacteria sp. WGA-A3 genus=unknown taxon_order=unknown taxon_class=unknown phylum=Poribacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_20cm_4_scaffold_108_29
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

25199..25552
DNA (354bp) protein (118aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=4806444 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
13_1_20cm_4_scaffold_108_30
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

25552..25776
DNA (225bp) protein (75aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=3714012 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Displaying items 1-30 of 77 in total

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