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13_1_20cm_4_scaffold_141

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Displaying items 1-30 of 32 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_141_1
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(3..863)
DNA (861bp) protein (287aa)
peptidase, m16 (pitrilysin) family (EC:3.4.24.-); K07263 zinc protease [EC:3.4.24.-] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
M16 family peptidase (EC:3.4.24.-)
Putative Zn-dependent peptidase id=2874868 bin=GWC2_Methylomirabilis_70_16 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_20cm_4_scaffold_141_2
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(860..2092)
DNA (1233bp) protein (411aa)
phosphonoacetate hydrolase Tax=GWA2_Rokubacteria_73_35_curated
Phosphonoacetate hydrolase id=1746034 bin=GWA2_Methylomirabilis_73_35 species=Alicycliphilus denitrificans genus=Alicycliphilus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
phosphonoacetate hydrolase
13_1_20cm_4_scaffold_141_3
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(2110..2766)
DNA (657bp) protein (219aa)
yedZ; heme-molybdoenzyme heme-containing subunit YedZ; cytochrome b subunit Tax=GWA2_Rokubacteria_73_35_curated
Sulfoxide reductase heme-binding subunit YedZ id=1746036 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
yedZ; heme-molybdoenzyme heme-containing subunit YedZ; cytochrome b subunit
13_1_20cm_4_scaffold_141_4
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(2773..3726)
DNA (954bp) protein (318aa)
yedY; exported heme-molybdoenzyme molybdopterin-containing subunit YedY; TAT export Tax=GWA2_Rokubacteria_73_35_curated
Sulfoxide reductase catalytic subunit YedY id=1746038 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
yedY; exported heme-molybdoenzyme molybdopterin-containing subunit YedY; TAT export
13_1_20cm_4_scaffold_141_5
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(3762..4442)
DNA (681bp) protein (227aa)
OmpR family response regulator; K07658 two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
DNA-binding response regulator id=1746127 bin=GWA2_Methylomirabilis_73_35 species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
phoP; Alkaline phosphatase synthesis transcriptional regulatory protein PhoP
13_1_20cm_4_scaffold_141_6
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4515..4904)
DNA (390bp) protein (130aa)
Uncharacterized protein {ECO:0000313|EMBL:CDQ09421.1}; TaxID=160808 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acid
id=14625483 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
13_1_20cm_4_scaffold_141_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(5018..6001)
DNA (984bp) protein (328aa)
glk; glucokinase (Glucose kinase) (EC:2.7.1.2) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
glk; glucokinase (Glucose kinase) (EC:2.7.1.2)
Glucokinase (Glucose kinase) id=3398321 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_141_8
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(6009..6932)
DNA (924bp) protein (308aa)
fbaB; fructose-bisphosphate aldolase (EC:4.1.2.13) Tax=GWA2_Rokubacteria_73_35_curated
fbaB; fructose-bisphosphate aldolase (EC:4.1.2.13)
Fructose-bisphosphate aldolase class I id=3398319 bin=GWA2_Methylomirabilis_73_35 species=Chamaesiphon minutus genus=Chamaesiphon taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_141_9
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(6995..8473)
DNA (1479bp) protein (493aa)
integral membrane sensor signal transduction histidine kinase Tax=GWA2_Rokubacteria_73_35_curated
Integral membrane sensor signal transduction histidine kinase id=1746130 bin=GWA2_Methylomirabilis_73_35 species=Haliangium ochraceum genus=Haliangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
sensor histidine kinase
13_1_20cm_4_scaffold_141_10
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(8495..8806)
DNA (312bp) protein (104aa)
cytochrome c biogenesis protein, transmembrane region Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Cytochrome c biogenesis protein, transmembrane region id=1746132 bin=GWA2_Methylomirabilis_73_35 species=ACD12 genus=ACD12 taxon_order=ACD12 taxon_class=ACD12 phylum=OP11 tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
thiol-disulfide isomerase-like thioredoxin
13_1_20cm_4_scaffold_141_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(8822..9019)
DNA (198bp) protein (66aa)
Putative thioredoxin Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative thioredoxin id=1746135 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Rhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_141_12
unknown

Not on your lists

comp(9016..9153)
DNA (138bp) protein (46aa)

This feature has no annotations

13_1_20cm_4_scaffold_141_13
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(9251..9913)
DNA (663bp) protein (221aa)
ttdB; Putative Tartrate dehydratase beta subunit (EC:4.2.1.32)
class I fumarate hydratase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Putative Tartrate dehydratase beta subunit id=1746139 bin=GWA2_Methylomirabilis_73_35 species=alpha proteobacterium BAL199 genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_141_14
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(9953..10891)
DNA (939bp) protein (313aa)
tartrate/fumarate subfamily Fe-S type hydro-lyase subunit alpha; K03779 L(+)-tartrate dehydratase alpha subunit [EC:4.2.1.32] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Fumarase alpha subunit id=1746141 bin=GWA2_Methylomirabilis_73_35 species=Verminephrobacter eiseniae genus=Verminephrobacter taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
tartrate/fumarate subfamily Fe-S type hydro-lyase subunit alpha
13_1_20cm_4_scaffold_141_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(10948..11232)
DNA (285bp) protein (95aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=1746143 bin=GWA2_Methylomirabilis_73_35 species=Sagittula stellata genus=Sagittula taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_20cm_4_scaffold_141_16
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(11235..11543)
DNA (309bp) protein (103aa)
id=14626788 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
id=4895587 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_20cm_4_scaffold_141_17
CSP1_5_NC10, NC10, Bacteria

Not on your lists

comp(11540..12004)
DNA (465bp) protein (155aa)
lactoylglutathione lyase (EC:4.4.1.5)
lactoylglutathione lyase Tax=CSP1_5_NC10
lactoylglutathione lyase id=14430027 bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Cyanobacteria tax=bin3_NC10 organism_group=NC10
13_1_20cm_4_scaffold_141_18
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(12001..12822)
DNA (822bp) protein (274aa)
arsM; arsenite S-adenosylmethyltransferase Tax=GWA2_Rokubacteria_70_23_curated
Methyltransferase type 11 id=4476340 bin=GWF2_Methylomirabilis_70_14 species=Candidatus Solibacter usitatus genus=Candidatus Solibacter taxon_order=Solibacterales taxon_class=Solibacteres phylum=Acidobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
arsM; arsenite S-adenosylmethyltransferase
13_1_20cm_4_scaffold_141_19
CSP1_5_NC10, NC10, Bacteria

Not on your lists

comp(12834..13133)
DNA (300bp) protein (100aa)
ArsR family transcriptional regulator; K03892 ArsR family transcriptional regulator Tax=CSP1_5_NC10
ArsR family transcriptional regulator; K03892 ArsR family transcriptional regulator id=14430028 bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Cyanobacteria tax=bin3_NC10 organism_group=NC10
ArsR family transcriptional regulator
13_1_20cm_4_scaffold_141_20
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

comp(13175..13981)
DNA (807bp) protein (269aa)
Protein arsC (Arsenate reductase) (Arsenical pump modifier) (Low molecular weight protein-tyrosine-phosphatase) {ECO:0000313|EMBL:CBE68183.1}; EC=1.20.4.- {ECO:0000313|EMBL:CBE68183.1};; EC=3.1.3.48 {
arsC; protein arsC (Arsenical pump modifier) (Low molecular weight protein-tyrosine-phosphatase) (EC:1.20.4.- 3.1.3.48)
Protein arsC (Arsenate reductase) (Arsenical pump modifier) (Low molecular weight protein-tyrosine-phosphatase) n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MEK6_9BACT
13_1_20cm_4_scaffold_141_21
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14055..14804
DNA (750bp) protein (250aa)
MIP family protein n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4XTD4_SORCE rbh
MIP family protein {ECO:0000313|EMBL:AGP33848.1}; TaxID=1254432 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellul
MIP family protein
13_1_20cm_4_scaffold_141_22
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

14801..15313
DNA (513bp) protein (171aa)
pat; N-acetyltransferase GCN5; K03823 phosphinothricin acetyltransferase [EC:2.3.1.183] Tax=GWA2_Rokubacteria_70_23_curated
GCN5-related N-acetyltransferase id=4689036 bin=GWC2_Methylomirabilis_70_24 species=Ktedonobacter racemifer genus=Ktedonobacter taxon_order=Ktedonobacterales taxon_class=Ktedonobacteria phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
N-acetyltransferase GCN5
13_1_20cm_4_scaffold_141_23
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(15310..17262)
DNA (1953bp) protein (651aa)
acsA; acetyl-coenzyme A synthetase (Acetate--CoA ligase) (Acyl-activating enzyme) (EC:6.2.1.1) Tax=GWC2_Rokubacteria_70_16_curated
acsA; acetyl-coenzyme A synthetase (Acetate--CoA ligase) (Acyl-activating enzyme) (EC:6.2.1.1)
Acetyl-coenzyme A synthetase id=4892762 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_20cm_4_scaffold_141_24
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(17296..17907)
DNA (612bp) protein (204aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Uncharacterized protein id=1746145 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_20cm_4_scaffold_141_25
unknown

Not on your lists

18079..18486
DNA (408bp) protein (136aa)

This feature has no annotations

13_1_20cm_4_scaffold_141_26
unknown

Not on your lists

18514..18840
DNA (327bp) protein (109aa)

This feature has no annotations

13_1_20cm_4_scaffold_141_27
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists

18979..19596
DNA (618bp) protein (206aa)
type 11 methyltransferase; K03183 ubiquinone/menaquinone biosynthesis methyltransferase [EC:2.1.1.163 2.1.1.201] Tax=RBG_13_Acidobacteria_68_16_curated
Putative methyltransferase, UbiE/COQ5 family n=1 Tax=Variovorax paradoxus B4 RepID=T1XCA0_VARPD
putative methyltransferase, UbiE/COQ5 family
13_1_20cm_4_scaffold_141_28
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(19593..20516)
DNA (924bp) protein (308aa)
Predicted protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=3461025 bin=GWA2_Methylomirabilis_73_35 species=Leishmania mexicana genus=Leishmania taxon_order=Kinetoplastida taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
trans-sialidase
13_1_20cm_4_scaffold_141_29
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(20678..21283)
DNA (606bp) protein (202aa)
alpha/beta hydrolase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=3033629 bin=GWC2_Methylomirabilis_70_16 species=Clostridium ultunense genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
13_1_20cm_4_scaffold_141_30
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21510..21845)
DNA (336bp) protein (112aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI00037792A1
Uncharacterized protein {ECO:0000313|EMBL:ETX07916.1}; TaxID=1429439 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
hypothetical protein
Displaying items 1-30 of 32 in total

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