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13_1_20cm_4_scaffold_195

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Displaying items 1-30 of 57 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_195_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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33..1133
DNA (1101bp) protein (367aa)
leuB; 3-isopropylmalate dehydrogenase (Beta-IPM dehydrogenase) (IMDH) (3-IPM-DH) (EC:1.1.1.85) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
leuB; 3-isopropylmalate dehydrogenase (EC:1.1.1.85)
3-isopropylmalate dehydrogenase id=4703436 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_195_2
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

1133..2140
DNA (1008bp) protein (336aa)
asd; Aspartate-semialdehyde dehydrogenase (ASA dehydrogenase) (ASADH) (EC:1.2.1.11) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
asd; Aspartate-semialdehyde dehydrogenase (ASA dehydrogenase) (ASADH) (EC:1.2.1.11)
Aspartate-semialdehyde dehydrogenase id=4800844 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good rbh
13_1_20cm_4_scaffold_195_3
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

2204..2449
DNA (246bp) protein (82aa)
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein id=4703405 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_195_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

2602..3201
DNA (600bp) protein (200aa)
truA; tRNA pseudouridine synthase A (EC:5.4.99.12); K06173 tRNA pseudouridine38-40 synthase [EC:5.4.99.12] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Pseudouridylate synthase I id=4703404 bin=GWA2_Methylomirabilis_73_35 species=Thermaerobacter subterraneus genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
tRNA pseudouridine synthase A
13_1_20cm_4_scaffold_195_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

3247..4017
DNA (771bp) protein (257aa)
formate dehydrogenase family accessory protein (FdhD) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative formate dehydrogenase family accessory protein (FdhD) id=4703403 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
formate dehydrogenase family accessory protein (FdhD)
13_1_20cm_4_scaffold_195_6
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

4029..4340
DNA (312bp) protein (104aa)
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein id=4703402 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_195_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

4505..4777
DNA (273bp) protein (91aa)
id=24540628 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
id=3227803 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
13_1_20cm_4_scaffold_195_8
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

4823..5329
DNA (507bp) protein (169aa)
formate dehydrogenase subunit alpha (EC:1.7.99.4); K00123 formate dehydrogenase, alpha subunit [EC:1.2.1.2] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
formate dehydrogenase subunit alpha (EC:1.7.99.4); K00123 formate dehydrogenase, alpha subunit [EC:1.2.1.2] id=24540627 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Thermodesulfobacterium geofontis genus=Thermodesulfobacterium taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
formate dehydrogenase
13_1_20cm_4_scaffold_195_9
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

5378..7834
DNA (2457bp) protein (819aa)
formate dehydrogenase major subunit; K00123 formate dehydrogenase, alpha subunit [EC:1.2.1.2] Tax=CSP1_6_Rokubacteria
formate dehydrogenase major subunit; K00123 formate dehydrogenase, alpha subunit [EC:1.2.1.2] id=24540626 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Caldalkalibacillus thermarum genus=Caldalkalibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin rbh
formate dehydrogenase major subunit
13_1_20cm_4_scaffold_195_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

7837..8625
DNA (789bp) protein (263aa)
4Fe-4S ferredoxin; K00124 formate dehydrogenase, beta subunit Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
4Fe-4S ferredoxin iron-sulfur binding domain protein id=4440924 bin=GWF2_Methylomirabilis_70_14 species=Thermobaculum terrenum genus=Thermobaculum taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
formate dehydrogenase, nitrate-inducible, iron-sulfur subunit
13_1_20cm_4_scaffold_195_11
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

8618..9442
DNA (825bp) protein (275aa)
Polysulfide reductase NrfD; K04015 protein NrfD Tax=CSP1_6_Rokubacteria
Polysulfide reductase NrfD; K04015 protein NrfD id=14627925 bin=bin7_NC10_sister species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
Polysulfide reductase NrfD
13_1_20cm_4_scaffold_195_12
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

9513..10385
DNA (873bp) protein (291aa)
formate dehydrogenase formation protein; K02380 FdhE protein Tax=GWA2_Rokubacteria_70_23_curated
Uncharacterized protein involved in formate dehydrogenase formation id=4440922 bin=GWF2_Methylomirabilis_70_14 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_20cm_4_scaffold_195_13
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

10441..11253
DNA (813bp) protein (271aa)
cytochrome c biogenesis protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
ResC/HemX-like cytochrome c biogenesis membrane protein id=3448980 bin=GWA2_Methylomirabilis_73_35 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ResC/HemX-like cytochrome c biogenesis membrane protein
13_1_20cm_4_scaffold_195_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

11253..12524
DNA (1272bp) protein (424aa)
hemA; glutamyl-tRNA reductase; K02492 glutamyl-tRNA reductase [EC:1.2.1.70] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Glutamyl-tRNA reductase id=3448982 bin=GWA2_Methylomirabilis_73_35 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
glutamyl-tRNA reductase
13_1_20cm_4_scaffold_195_15
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

12521..13441
DNA (921bp) protein (307aa)
hemC; porphobilinogen deaminase; K01749 hydroxymethylbilane synthase [EC:2.5.1.61] Tax=GWA2_Rokubacteria_73_35_curated
hemC; porphobilinogen deaminase (EC:2.5.1.61)
Porphobilinogen deaminase id=3448984 bin=GWA2_Methylomirabilis_73_35 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_195_16
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

13438..14274
DNA (837bp) protein (279aa)
uroporphyrin-III C-methyltransferase; K13542 uroporphyrinogen III methyltransferase / synthase [EC:2.1.1.107 4.2.1.75] Tax=GWA2_Rokubacteria_73_35_curated
hemD; porphyrin biosynthesis protein HemD (EC:2.1.1.107 4.2.1.75)
Uroporphyrin-III C-methyltransferase id=3449156 bin=GWA2_Methylomirabilis_73_35 species=Thermodesulfatator indicus genus=Thermodesulfatator taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_195_17
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

14274..15131
DNA (858bp) protein (286aa)
hemB; Delta-aminolevulinic acid dehydratase (porphobilinogen synthase) (EC:4.2.1.24) Tax=GWA2_Rokubacteria_73_35_curated
hemB; Delta-aminolevulinic acid dehydratase (porphobilinogen synthase) (EC:4.2.1.24)
Delta-aminolevulinic acid dehydratase id=3449158 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_195_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

15146..15583
DNA (438bp) protein (146aa)
BadM/Rrf2 family transcriptional regulator Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Transcriptional regulator, Rrf2 family id=3942774 bin=GWA2_Methylomirabilis_73_35 species=Pseudoflavonifractor capillosus genus=Pseudoflavonifractor taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
BadM/Rrf2 family transcriptional regulator
13_1_20cm_4_scaffold_195_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

15597..16517
DNA (921bp) protein (307aa)
cysK; pyridoxal-phosphate (PLP) dependent enzymes family; subunit of cysteine synthase A (O-acetylserine sulfhydrolase A) (EC:2.5.1.47) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
cysK; pyridoxal-phosphate (PLP) dependent enzymes family; subunit of cysteine synthase A (O-acetylserine sulfhydrolase A) (EC:2.5.1.47)
Cysteine synthase id=3942773 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_195_20
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

16540..16821
DNA (282bp) protein (94aa)
hypothetical protein; K03636 molybdopterin synthase sulfur carrier subunit Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Putative Molybdopterin biosynthesis protein moeB (Modular protein) id=3367016 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Molybdopterin biosynthesis protein moeB
13_1_20cm_4_scaffold_195_21
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

16818..17282
DNA (465bp) protein (155aa)
Mov34/MPN/PAD-1 family protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative Mov34/MPN/PAD-1 family protein id=3942771 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative sulfurylase
13_1_20cm_4_scaffold_195_22
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

17282..18559
DNA (1278bp) protein (426aa)
glutamate-1-semialdehyde-2,1-aminomutase; K01845 glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] Tax=GWC2_Rokubacteria_70_16_curated
Glutamate-1-semialdehyde 2,1-aminomutase id=3910780 bin=GWF2_Methylomirabilis_70_14 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
glutamate-1-semialdehyde-2,1-aminomutase
13_1_20cm_4_scaffold_195_23
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

18634..19224
DNA (591bp) protein (197aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=3942769 bin=GWA2_Methylomirabilis_73_35 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
cytochrome C
13_1_20cm_4_scaffold_195_24
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

19508..22405
DNA (2898bp) protein (966aa)
molybdopterin oxidoreductase Fe4S4 region; K00184 molybdopterin oxidoreductase, iron-sulfur binding subunit [EC:1.2.7.-] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
molybdopterin oxidoreductase Fe4S4 region; K00184 molybdopterin oxidoreductase, iron-sulfur binding subunit [EC:1.2.7.-] id=14626217 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10 rbh
molybdopterin oxidoreductase Fe4S4 region
13_1_20cm_4_scaffold_195_25
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

22446..23687
DNA (1242bp) protein (414aa)
hypothetical protein; K00185 molybdopterin oxidoreductase, membrane subunit [EC:1.2.7.-] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein; K00185 molybdopterin oxidoreductase, membrane subunit [EC:1.2.7.-] id=14626218 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_20cm_4_scaffold_195_26
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

23671..24183
DNA (513bp) protein (171aa)
hypothetical membrane protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Hypothetical membrane protein id=3806666 bin=GWA2_Methylomirabilis_73_35 species=Gemmatimonas aurantiaca genus=Gemmatimonas taxon_order=Gemmatimonadales taxon_class=Gemmatimonadetes phylum=Gemmatimonadetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Protein of unknown function DUF3341
13_1_20cm_4_scaffold_195_27
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

24180..24686
DNA (507bp) protein (169aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Alcohol dehydrogenase large subunit id=3806665 bin=GWA2_Methylomirabilis_73_35 species=Mariprofundus ferrooxydans genus=Mariprofundus taxon_order=Mariprofundales taxon_class=Zetaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_20cm_4_scaffold_195_28
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

24688..25800
DNA (1113bp) protein (371aa)
mopC; protein MopC Tax=GWA2_Rokubacteria_73_35_curated
MopC id=3806664 bin=GWA2_Methylomirabilis_73_35 species=Desulfobacterium autotrophicum genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_20cm_4_scaffold_195_29
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

25925..26983
DNA (1059bp) protein (353aa)
molybdenum cofactor synthesis protein; K03750 molybdopterin molybdotransferase [EC:2.10.1.1] Tax=GWA2_Rokubacteria_73_35_curated
Molybdenum cofactor synthesis domain protein id=3806663 bin=GWA2_Methylomirabilis_73_35 species=Haliangium ochraceum genus=Haliangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
molybdenum cofactor synthesis protein
13_1_20cm_4_scaffold_195_30
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

27019..27786
DNA (768bp) protein (256aa)
TPR repeat-containing protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Tol-pal system protein YbgF id=3806662 bin=GWA2_Methylomirabilis_73_35 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
tol-pal system protein YbgF
Displaying items 1-30 of 57 in total

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