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13_1_20cm_4_scaffold_6490

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Displaying 17 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_6490_1
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists


comp(3..248)
DNA (246bp) protein (82aa)
tuf; elongation factor Tu Tax=CSP1_6_Rokubacteria
tuf; elongation factor Tu id=14625952 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=bin7_NC10_sister organism_group=NC10
tuf2; elongation factor Tu 2
13_1_20cm_4_scaffold_6490_2
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(277..972)
DNA (696bp) protein (232aa)
fusA-3; elongation factor G; K02355 elongation factor G Tax=GWA2_Rokubacteria_73_35_curated
Elongation factor G 1 id=3836488 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
elongation factor G
13_1_20cm_4_scaffold_6490_3
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(932..2248)
DNA (1317bp) protein (439aa)
fusA-3; elongation factor G; K02355 elongation factor G Tax=GWA2_Rokubacteria_73_35_curated
Elongation factor G id=1776811 bin=GWA2_Methylomirabilis_73_35 species=Thermincola potens genus=Thermincola taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
fusA-3; elongation factor G
13_1_20cm_4_scaffold_6490_4
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists


comp(2327..2671)
DNA (345bp) protein (115aa)
30S ribosomal protein S7; K02992 small subunit ribosomal protein S7 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
30S ribosomal protein S7; K02992 small subunit ribosomal protein S7 id=14627329 bin=bin7_NC10_sister species=Photobacterium profundum genus=Photobacterium taxon_order=Vibrionales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
rpsG; 30S ribosomal protein S7
13_1_20cm_4_scaffold_6490_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


comp(2680..3060)
DNA (381bp) protein (127aa)
rpsL; 30S ribosomal protein S12; K02950 small subunit ribosomal protein S12 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
30S ribosomal protein S12 id=3836486 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=unknown taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rpsL; 30S ribosomal protein S12
13_1_20cm_4_scaffold_6490_6
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(3158..3751)
DNA (594bp) protein (198aa)
rpoC; RNA polymerase, beta prime subunit (EC:2.7.7.6) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
rpoC; RNA polymerase, beta prime subunit (EC:2.7.7.6) id=14627331 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
rpoC; DNA-directed RNA polymerase subunit beta
13_1_20cm_4_scaffold_6490_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(3759..7214)
DNA (3456bp) protein (1152aa)
rpoC; RNA polymerase, beta prime subunit (EC:2.7.7.6) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
rpoC; RNA polymerase, beta prime subunit (EC:2.7.7.6) id=14627331 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10 rbh
rpoC; RNA polymerase, beta prime subunit (EC:2.7.7.6)
13_1_20cm_4_scaffold_6490_8
GWA2_OP3X_41_15_curated, OP3X, Bacteria

Not on your lists

comp(7241..10978)
DNA (3738bp) protein (1246aa)
rpoB; DNA-directed RNA polymerase subunit beta; K03043 DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] Tax=GWA2_OP3X_41_15_curated
rpoB; DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta n=1 Tax=Chlamydophila pneumoniae (strain LPCoLN) RepID=D0ZYL0_CHLPP
13_1_20cm_4_scaffold_6490_9
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists


comp(11038..11427)
DNA (390bp) protein (130aa)
50S ribosomal protein L7/L12; K02935 large subunit ribosomal protein L7/L12 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
50S ribosomal protein L7/L12; K02935 large subunit ribosomal protein L7/L12 id=14627333 bin=bin7_NC10_sister species=Ammonifex degensii genus=Ammonifex taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
rplL; 50S ribosomal subunit protein L7/L12
13_1_20cm_4_scaffold_6490_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


comp(11590..12138)
DNA (549bp) protein (183aa)
rplJ; 50S ribosomal protein L10; K02864 large subunit ribosomal protein L10 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
rplJ; 50S ribosomal protein L10; K02864 large subunit ribosomal protein L10 id=14627334 bin=bin7_NC10_sister species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
50S ribosomal protein L10
13_1_20cm_4_scaffold_6490_11
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists


comp(12141..12872)
DNA (732bp) protein (244aa)
rplA; 50S ribosomal protein L1; K02863 large subunit ribosomal protein L1 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
50S ribosomal protein L1 id=3447243 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
50S ribosomal protein L1
13_1_20cm_4_scaffold_6490_12
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists


comp(12891..13310)
DNA (420bp) protein (140aa)
rplK; 50S ribosomal protein L11 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
50S ribosomal protein L11 id=3447240 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
rplK; 50S ribosomal protein L11
13_1_20cm_4_scaffold_6490_13
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(13307..13861)
DNA (555bp) protein (185aa)
nusG; component in transcription antitermination Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Transcription antitermination protein nusG id=3836412 bin=GWF2_Methylomirabilis_70_14 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
nusG; component in transcription antitermination
13_1_20cm_4_scaffold_6490_14
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(13858..14049)
DNA (192bp) protein (64aa)
preprotein translocase, SecE subunit Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Preprotein translocase, SecE subunit id=3836410 bin=GWF2_Methylomirabilis_70_14 species=Ruminococcus albus genus=Ruminococcus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
preprotein translocase subunit SecE
13_1_20cm_4_scaffold_6490_trna_1
unknown

Not on your lists

comp(14079..14152)
DNA (74bp)
transferRNA
13_1_20cm_4_scaffold_6490_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


comp(14164..14313)
DNA (150bp) protein (50aa)
rpmG; 50S ribosomal protein L33; K02913 large subunit ribosomal protein L33 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
50S ribosomal protein L33 id=3836408 bin=GWF2_Methylomirabilis_70_14 species=Aquifex aeolicus genus=Aquifex taxon_order=Aquificales taxon_class=Aquificae phylum=Aquificae tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rpmG; 50S ribosomal protein L33
13_1_20cm_4_scaffold_6490_16
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(14323..14430)
DNA (108bp) protein (36aa)
tufB; Elongation factor Tu (EF-Tu) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
tufB; Elongation factor Tu (EF-Tu)
Elongation factor Tu id=1776813 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Displaying 17 items

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