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13_1_20cm_4_scaffold_3921

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_3921_1

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3..791
DNA (789bp) protein (263aa)
hypothetical protein n=1 Tax=Nodosilinea nodulosa RepID=UPI0002EFAD3E
Putative uncharacterized protein {ECO:0000313|EMBL:CBI71175.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
putative Fe-S protein
13_1_20cm_4_scaffold_3921_2
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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948..2396
DNA (1449bp) protein (483aa)
Major facilitator superfamily MFS_1 n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CWD2_9BACT rbh
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:EDY21724.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
MFS transporter
13_1_20cm_4_scaffold_3921_3
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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comp(2459..3001)
DNA (543bp) protein (181aa)
RNA 2',3'-cyclic phosphodiesterase {ECO:0000256|HAMAP-Rule:MF_01940}; Short=RNA 2',3'-CPDase {ECO:0000256|HAMAP-Rule:MF_01940};; EC=3.1.4.- {ECO:0000256|HAMAP-Rule:MF_01940};; TaxID=497964 species="Ba
2'-5' RNA ligase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D614_9BACT
2'-5' RNA ligase
13_1_20cm_4_scaffold_3921_4
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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comp(3119..4150)
DNA (1032bp) protein (344aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XRS8_9BACT
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:EEF57439.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivi
short chain dehydrogenase/reductase oxidoreductase
13_1_20cm_4_scaffold_3921_5
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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comp(4279..4740)
DNA (462bp) protein (154aa)
SsrA-binding protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DCN7_9BACT
SsrA-binding protein {ECO:0000256|HAMAP-Rule:MF_00023, ECO:0000256|SAAS:SAAS00023472}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus
SsrA-binding protein
13_1_20cm_4_scaffold_3921_6
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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comp(4932..5255)
DNA (324bp) protein (108aa)
DNA-directed RNA polymerase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00054253}; Short=RNAP omega subunit {ECO:0000256|HAMAP-Rule:MF_00366};; EC=2.7.7.6 {ECO:0000256|HAMAP-R
DNA-directed RNA polymerase subunit omega n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DCN8_9BACT
DNA-directed RNA polymerase subunit omega
13_1_20cm_4_scaffold_3921_trna_1
unknown

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5492..5565
DNA (74bp)
transferRNA
13_1_20cm_4_scaffold_3921_7
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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5660..6205
DNA (546bp) protein (182aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D489_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY18690.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
13_1_20cm_4_scaffold_3921_8
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(6513..7718)
DNA (1206bp) protein (402aa)
lldD; L-lactate dehydrogenase (FMN-dependent) related enzyme; K00101 L-lactate dehydrogenase (cytochrome) [EC:1.1.2.3] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
lldD; L-lactate dehydrogenase (FMN-dependent)-like alpha-hydroxy acid dehydrogenases (EC:1.1.2.3)
L-lactate dehydrogenase (FMN-dependent)-like alpha-hydroxy acid dehydrogenases n=1 Tax=Prochlorococcus marinus (strain MIT 9211) RepID=A9BCT8_PROM4 rbh
13_1_20cm_4_scaffold_3921_9
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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comp(7802..9325)
DNA (1524bp) protein (508aa)
phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase (EC:3.5.4.10)
Bifunctional purine biosynthesis protein PurH n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CZH3_9BACT rbh
Bifunctional purine biosynthesis protein PurH {ECO:0000256|HAMAP-Rule:MF_00139, ECO:0000256|SAAS:SAAS00010516}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" sourc
13_1_20cm_4_scaffold_3921_10
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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comp(9405..10343)
DNA (939bp) protein (313aa)
Transcriptional regulator, AraC family n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XCC3_9BACT
Transcriptional regulator, AraC family {ECO:0000313|EMBL:EEF62591.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.
araC; AraC family transcriptional regulator
13_1_20cm_4_scaffold_3921_11
Oscillatoria nigro-viridis, Oscillatoria, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

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comp(10349..11116)
DNA (768bp) protein (256aa)
hypothetical protein n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI00035F3267
Uncharacterized protein {ECO:0000313|EMBL:AFZ10728.1}; TaxID=179408 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Oscillatoria.;" source="Oscillatoria nigro-viridis PCC 711
hypothetical protein
13_1_20cm_4_scaffold_3921_12
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(11200..11961)
DNA (762bp) protein (254aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D6Y5_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY17936.1}; Flags: Precursor;; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
13_1_20cm_4_scaffold_3921_13
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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12194..12481
DNA (288bp) protein (96aa)
Putative anti-sigma regulatory factor, serine/threonine protein kinase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D6Y3_9BACT
Putative anti-sigma regulatory factor, serine/threonine protein kinase {ECO:0000313|EMBL:EDY17934.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoni
putative anti-sigma regulatory factor
13_1_20cm_4_scaffold_3921_14
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

12531..13553
DNA (1023bp) protein (341aa)
Holliday junction ATP-dependent DNA helicase RuvB {ECO:0000256|HAMAP-Rule:MF_00016}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00016};; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Ch
Holliday junction ATP-dependent DNA helicase RuvB n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D8Y0_9BACT rbh
ruvB; Holliday junction DNA helicase RuvB
13_1_20cm_4_scaffold_3921_15
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

13655..14944
DNA (1290bp) protein (430aa)
Exodeoxyribonuclease 7 large subunit {ECO:0000256|HAMAP-Rule:MF_00378, ECO:0000256|SAAS:SAAS00195504}; EC=3.1.11.6 {ECO:0000256|HAMAP-Rule:MF_00378, ECO:0000256|SAAS:SAAS00195506};; Exodeoxyribonuclea
Exodeoxyribonuclease 7 large subunit n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CWH1_9BACT rbh
xseA; exodeoxyribonuclease VII large subunit
13_1_20cm_4_scaffold_3921_16
unknown

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comp(14981..15193)
DNA (213bp) protein (71aa)

This feature has no annotations

13_1_20cm_4_scaffold_3921_17
Ferrimonas balearica, Ferrimonas, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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15322..16245
DNA (924bp) protein (308aa)
Diacylglycerol kinase catalytic region n=1 Tax=Ferrimonas balearica (strain DSM 9799 / CCM 4581 / PAT) RepID=E1SSD0_FERBD
Diacylglycerol kinase catalytic region {ECO:0000313|EMBL:ADN74970.1}; TaxID=550540 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Ferrimonadaceae; Ferrimonas.;" source="Ferri
diacylglycerol kinase catalytic subunit
13_1_20cm_4_scaffold_3921_18
unknown

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16312..16434
DNA (123bp) protein (41aa)

This feature has no annotations

Displaying 19 items

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