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13_1_20cm_4_scaffold_72

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Displaying 29 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_72_1

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comp(1..3387)
DNA (3387bp) protein (1129aa)
Tetratricopeptide TPR_2 repeat protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01NM4_SOLUE
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF49190.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
13_1_20cm_4_scaffold_72_2

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comp(4011..4301)
DNA (291bp) protein (97aa)
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF49067.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
TPR repeat-containing serine/threonin protein kinase id=24431878 bin=RBG_19FT_COMBO_Aminicenantes_65_30 tax=RBG_19FT_COMBO_Aminicenantes_65_30 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
13_1_20cm_4_scaffold_72_3

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comp(4372..6336)
DNA (1965bp) protein (655aa)
Tetratricopeptide TPR_2 repeat protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01NM4_SOLUE
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF49190.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
13_1_20cm_4_scaffold_72_4
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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6582..8354
DNA (1773bp) protein (591aa)
msbA; lipid A export ATP-binding/permease protein MsbA (EC:3.6.3.-)
ABC transporter-related protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D206_9BACT
ABC transporter-related protein {ECO:0000313|EMBL:EDY19768.1}; Flags: Precursor;; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin
13_1_20cm_4_scaffold_72_5
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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comp(8473..9021)
DNA (549bp) protein (183aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D3I2_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY18812.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
13_1_20cm_4_scaffold_72_6
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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comp(9032..9511)
DNA (480bp) protein (160aa)
Peptidoglycan-binding LysM n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D3I1_9BACT
Peptidoglycan-binding LysM {ECO:0000313|EMBL:EDY18811.1}; Flags: Precursor;; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;
peptidoglycan-binding lysin domain-containing protein
13_1_20cm_4_scaffold_72_7
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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9658..9867
DNA (210bp) protein (70aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D3I0_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY18810.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
hypothetical protein
13_1_20cm_4_scaffold_72_8
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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9867..10691
DNA (825bp) protein (275aa)
putative proteasome subunit beta (EC:3.4.25.1)
20S proteasome A and B subunits n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D3H9_9BACT
20S proteasome A and B subunits {ECO:0000313|EMBL:EDY18809.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
13_1_20cm_4_scaffold_72_9
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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10688..11467
DNA (780bp) protein (260aa)
20S proteasome A and B subunits n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D3H8_9BACT
20S proteasome A and B subunits {ECO:0000313|EMBL:EDY18808.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
putative proteasome subunit alpha
13_1_20cm_4_scaffold_72_10
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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11502..12293
DNA (792bp) protein (264aa)
N-acetylmuramoyl-L-alanine amidase {ECO:0000313|EMBL:EDY18807.1}; EC=3.5.1.28 {ECO:0000313|EMBL:EDY18807.1};; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source=
N-acetylmuramoyl-L-alanine amidase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D3H7_9BACT
hypothetical protein
13_1_20cm_4_scaffold_72_11
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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12331..13068
DNA (738bp) protein (246aa)
Peptidoglycan-binding domain 1 protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D3H6_9BACT
Peptidoglycan-binding domain 1 protein {ECO:0000313|EMBL:EDY18806.1}; Flags: Precursor;; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavu
podJ; localization factor PodJL
13_1_20cm_4_scaffold_72_12
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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comp(13112..13984)
DNA (873bp) protein (291aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D3H5_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY18805.1}; Flags: Precursor;; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
13_1_20cm_4_scaffold_72_13
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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comp(14048..14680)
DNA (633bp) protein (211aa)
Outer membrane chaperone Skp (OmpH) n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D714_9BACT
Outer membrane chaperone Skp (OmpH) {ECO:0000313|EMBL:EDY17665.1}; Flags: Precursor;; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus E
hlpA; Outer membrane protein
13_1_20cm_4_scaffold_72_14
GWF2_Verrucomicrobia_62_7_curated, Verrucomicrobiae, Verrucomicrobia, Bacteria

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comp(14736..17051)
DNA (2316bp) protein (772aa)
putative outer membrane protein n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001745AD5 rbh
Outer membrane protein; K07277 outer membrane protein Tax=GWF2_Verrucomicrobia_62_7_curated
Outer membrane protein
13_1_20cm_4_scaffold_72_15
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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comp(17202..18293)
DNA (1092bp) protein (364aa)
Cyclic dehypoxanthine futalosine synthase {ECO:0000256|HAMAP-Rule:MF_00992}; Short=Cyclic DHFL synthase {ECO:0000256|HAMAP-Rule:MF_00992};; EC=1.21.98.1 {ECO:0000256|HAMAP-Rule:MF_00992};; Dehypoxanth
Radical SAM domain protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D717_9BACT
Radical SAM domain-containing protein
13_1_20cm_4_scaffold_72_16
Hyalangium minutum, Hyalangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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18344..19390
DNA (1047bp) protein (349aa)
D-aspartate oxidase (EC:1.4.3.1)
D-aspartate oxidase n=1 Tax=Kribbella flavida (strain DSM 17836 / JCM 10339 / NBRC 14399) RepID=D2Q3A8_KRIFD
D-amino-acid oxidase {ECO:0000313|EMBL:KFE72511.1}; TaxID=394096 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Hyalangium.;" source="Hyalang
13_1_20cm_4_scaffold_72_17
Methanosarcina acetivorans, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(19402..19800)
DNA (399bp) protein (133aa)
beta/gama crystallin family protein n=1 Tax=Schlesneria paludicola RepID=UPI00029B2611
Beta/gama crystallin family protein {ECO:0000313|EMBL:AAM05909.1}; TaxID=188937 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Metha
beta/gama crystallin family protein
13_1_20cm_4_scaffold_72_18
Crinalium epipsammum, Crinalium, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

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comp(19924..20475)
DNA (552bp) protein (184aa)
Superoxide dismutase [Cu-Zn] {ECO:0000256|RuleBase:RU000393}; EC=1.15.1.1 {ECO:0000256|RuleBase:RU000393};; Flags: Precursor;; TaxID=1173022 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Os
Superoxide dismutase (EC:1.15.1.1)
Superoxide dismutase [Cu-Zn] n=1 Tax=Crinalium epipsammum PCC 9333 RepID=K9W528_9CYAN
13_1_20cm_4_scaffold_72_19

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comp(20580..21749)
DNA (1170bp) protein (390aa)
Glycosyl transferase group 1 n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DBN4_9BACT
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF49399.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
group 1 glycosyl transferase
13_1_20cm_4_scaffold_72_20
unknown

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22023..22655
DNA (633bp) protein (211aa)

This feature has no annotations

13_1_20cm_4_scaffold_72_21

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22642..23010
DNA (369bp) protein (123aa)
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF48383.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein id=128396 bin=ACD79 species=ACD79 genus=ACD79 taxon_order=ACD79 taxon_class=ACD79 phylum=Clamydiae tax=ACD79 organism_group=Chlamydiae organism_desc=Novel, branching deeply from Chlamydiae
hypothetical protein
13_1_20cm_4_scaffold_72_22
unknown

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23212..23592
DNA (381bp) protein (127aa)

This feature has no annotations

13_1_20cm_4_scaffold_72_23

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23949..24164
DNA (216bp) protein (72aa)
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF48385.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
13_1_20cm_4_scaffold_72_24

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comp(24225..24980)
DNA (756bp) protein (252aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DCE7_9BACT rbh
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF48386.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
fabG; 3-oxoacyl-ACP reductase
13_1_20cm_4_scaffold_72_25
RIFOXYA1_FULL_Xanthomonadales_68_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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25051..26220
DNA (1170bp) protein (390aa)
methylmalonyl-CoA mutase n=1 Tax=Xanthomonas sacchari RepID=UPI000262ADF4
methylmalonyl-CoA mutase, N-terminal domain/subunit Tax=RIFOXYA1_FULL_Xanthomonadales_68_6_curated
methylmalonyl-CoA mutase
13_1_20cm_4_scaffold_72_26
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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26217..28025
DNA (1809bp) protein (603aa)
Methylmalonyl-CoA mutase, large subunit {ECO:0000313|EMBL:EDY15898.1}; EC=5.4.99.2 {ECO:0000313|EMBL:EDY15898.1};; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" so
Methylmalonyl-CoA mutase, large subunit n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DCE9_9BACT
methylmalonyl-CoA mutase
13_1_20cm_4_scaffold_72_27
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

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28150..28899
DNA (750bp) protein (250aa)
hypothetical protein n=1 Tax=Thioalkalivibrio sp. ARh3 RepID=UPI00037EF4E6 rbh
hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
hypothetical protein
13_1_20cm_4_scaffold_72_28

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comp(28879..29394)
DNA (516bp) protein (172aa)
Nucleoside-triphosphatase CTN_0656 n=1 Tax=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) RepID=B9K799_THENN
Marine sediment metagenome DNA, contig: S01H1_S08721 {ECO:0000313|EMBL:GAG12123.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
putative NTPase
13_1_20cm_4_scaffold_72_29
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

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comp(29649..30419)
DNA (771bp) protein (257aa)
Phosphoesterase n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q027T7_SOLUE
Phosphoesterase {ECO:0000313|EMBL:ABJ82720.1}; Flags: Precursor;; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibac
phosphoesterase
Displaying 29 items

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