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13_1_20cm_4_scaffold_382

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Displaying 21 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_382_1
unknown

Not on your lists

comp(3..113)
DNA (111bp) protein (37aa)

This feature has no annotations

13_1_20cm_4_scaffold_382_2
unknown

Not on your lists

comp(279..824)
DNA (546bp) protein (182aa)

This feature has no annotations

13_1_20cm_4_scaffold_382_3
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(909..1172)
DNA (264bp) protein (88aa)
atpC; ATP synthase epsilon chain (EC:3.6.3.14); K02114 F-type H+-transporting ATPase subunit epsilon [EC:3.6.3.14] Tax=RBG_16_Gemmatimonadetes_66_8_curated
ATP synthase epsilon chain n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A699_GEMAT
ATPase, F1 complex, delta/epsilon subunit
13_1_20cm_4_scaffold_382_4
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(1172..2593)
DNA (1422bp) protein (474aa)
ATP synthase subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; EC=3.6.3.14 {ECO:0000256|HAMAP-Rule:MF_01347};; ATP synthase F1 sector subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; F-ATPase subunit bet
atpD; ATP synthase beta chain (EC:3.6.3.14)
ATP synthase subunit beta n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A698_GEMAT
13_1_20cm_4_scaffold_382_5
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(2670..3551)
DNA (882bp) protein (294aa)
atpG; F0F1 ATP synthase subunit gamma (EC:3.6.3.14); K02115 F-type H+-transporting ATPase subunit gamma [EC:3.6.3.14] Tax=RBG_16_Gemmatimonadetes_66_8_curated
ATP synthase gamma chain n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=ATPG_GEMAT
ATP synthase gamma chain
13_1_20cm_4_scaffold_382_6
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(3551..5149)
DNA (1599bp) protein (533aa)
atpA; ATP synthase alpha chain (EC:3.6.3.14); K02111 F-type H+-transporting ATPase subunit alpha [EC:3.6.3.14] Tax=RBG_16_Gemmatimonadetes_66_8_curated
ATP synthase subunit alpha n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A696_GEMAT rbh
ATP synthase subunit alpha
13_1_20cm_4_scaffold_382_7
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(5178..5969)
DNA (792bp) protein (264aa)
AraC family transcriptional regulator n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A695_GEMAT
AraC family transcriptional regulator Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
AraC family transcriptional regulator
13_1_20cm_4_scaffold_382_8
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(5966..6439)
DNA (474bp) protein (158aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A694_GEMAT
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
NUDIX hydrolase
13_1_20cm_4_scaffold_382_9
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(6560..7567)
DNA (1008bp) protein (336aa)
Putative transporter n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AEH1_GEMAT
putative transporter; K02067 putative ABC transport system substrate-binding protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
putative transporter
13_1_20cm_4_scaffold_382_10
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(7564..8289)
DNA (726bp) protein (242aa)
Putative ABC transporter ATP-binding protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A693_GEMAT
putative ABC transporter ATP-binding protein; K02065 putative ABC transport system ATP-binding protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
putative ABC transporter ATP-binding protein
13_1_20cm_4_scaffold_382_11
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(8286..8978)
DNA (693bp) protein (231aa)
Putative transporter n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AEH0_GEMAT
putative transporter; K02066 putative ABC transport system permease protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
putative transporter
13_1_20cm_4_scaffold_382_12
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(9120..10100)
DNA (981bp) protein (327aa)
RNA polymerase sigma factor n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A692_GEMAT
RNA polymerase sigma factor; K03086 RNA polymerase primary sigma factor Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
RNA polymerase sigma factor
13_1_20cm_4_scaffold_382_trna_1
unknown

Not on your lists

10253..10325
DNA (73bp)
transferRNA
13_1_20cm_4_scaffold_382_trna_2
unknown

Not on your lists

10421..10493
DNA (73bp)
transferRNA
13_1_20cm_4_scaffold_382_trna_3
unknown

Not on your lists

10523..10596
DNA (74bp)
transferRNA
13_1_20cm_4_scaffold_382_trna_4
unknown

Not on your lists

10684..10757
DNA (74bp)
transferRNA
13_1_20cm_4_scaffold_382_trna_5
unknown

Not on your lists

10762..10835
DNA (74bp)
transferRNA
13_1_20cm_4_scaffold_382_13
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(10801..12564)
DNA (1764bp) protein (588aa)
Uncharacterized protein n=1 Tax=Bacteroides sp. 2_1_33B RepID=D0TJ95_9BACE
Uncharacterized protein {ECO:0000313|EMBL:KIC94050.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacte
hypothetical protein
13_1_20cm_4_scaffold_382_14
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(12554..14266)
DNA (1713bp) protein (571aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00037A0495
Uncharacterized protein {ECO:0000313|EMBL:KIC94210.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacte
hypothetical protein
13_1_20cm_4_scaffold_382_15
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(14266..15918)
DNA (1653bp) protein (551aa)
Putative outer membrane protein probably involved in nutrient binding n=1 Tax=Parabacteroides sp. CAG:2 RepID=R6JFW8_9PORP rbh
Starch-binding protein {ECO:0000313|EMBL:KIC94051.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter
hypothetical protein
13_1_20cm_4_scaffold_382_16
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(15933..19484)
DNA (3552bp) protein (1184aa)
TonB-linked outer membrane protein, SusC/RagA family n=2 Tax=Parabacteroides RepID=E1YSF6_9PORP rbh
Collagen-binding protein {ECO:0000313|EMBL:KIC94052.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibact
hypothetical protein
Displaying 21 items

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