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13_1_20cm_4_scaffold_3869

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_3869_1
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(1..240)
DNA (240bp) protein (80aa)
Anti-FecI sigma factor, FecR n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PU33_CHIPD
Anti-FecI sigma factor, FecR {ECO:0000313|EMBL:ACU64628.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga
anti-FecI sigma factor FecR
13_1_20cm_4_scaffold_3869_2
unknown

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comp(204..461)
DNA (258bp) protein (86aa)

This feature has no annotations

13_1_20cm_4_scaffold_3869_3
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

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comp(837..2615)
DNA (1779bp) protein (593aa)
Na+/solute symporter n=1 Tax=mine drainage metagenome RepID=E6Q243_9ZZZZ rbh
Na+/solute symporter Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
Na+/solute symporter
13_1_20cm_4_scaffold_3869_4
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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comp(2656..3459)
DNA (804bp) protein (268aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Uncharacterized protein id=3792921 bin=GWF2_Lentisphaerae_57_35 species=mine drainage metagenome genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Lentisphaerae_57_35 organism_group=Lentisphaerae organism_desc=a459
hypothetical protein
13_1_20cm_4_scaffold_3869_5
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(3555..4157)
DNA (603bp) protein (201aa)
RNA polymerase ECF-type sigma factor n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ABW3_GEMAT
RNA polymerase ECF-type sigma factor {ECO:0000313|EMBL:BAH39990.1}; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aurantia
RNA polymerase ECF-type sigma factor
13_1_20cm_4_scaffold_3869_6
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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comp(4223..5302)
DNA (1080bp) protein (360aa)
aminoglycoside phosphotransferase n=1 Tax=Acidobacteriaceae bacterium TAA166 RepID=UPI0003B37AB1 rbh
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
aminoglycoside phosphotransferase
13_1_20cm_4_scaffold_3869_7
RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated, Acidobacteria, Bacteria

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comp(5310..5990)
DNA (681bp) protein (227aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated
alias=16ft_combo_ws3_scaffold_3415_20 id=24596998 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
13_1_20cm_4_scaffold_3869_8
unknown

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6219..6554
DNA (336bp) protein (112aa)

This feature has no annotations

13_1_20cm_4_scaffold_3869_9
unknown

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6636..7352
DNA (717bp) protein (239aa)

This feature has no annotations

13_1_20cm_4_scaffold_3869_10
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(7157..8233)
DNA (1077bp) protein (359aa)
gtuS2-23; Glycosyltransferase, family 2 (EC:2.4.1.-) Tax=RBG_16_RIF_WS3X_71_46_curated
Family 2 glycosyl transferase n=1 Tax=Streptomyces auratus AGR0001 RepID=J2K796_9ACTO id=5224820 bin=16ft_combo_ws3_JS1 species=Streptomyces auratus genus=Streptomyces taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Glycosyltransferase like family 2
13_1_20cm_4_scaffold_3869_11
RBG_16_Acidobacteria_64_8_curated, Acidobacteria, Bacteria

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comp(8311..9234)
DNA (924bp) protein (308aa)
galE; UDP-glucose 4-epimerase (UDP-galactose 4-epimerase) (Galactowaldenase) (EC:5.1.3.2) Tax=RBG_16_Acidobacteria_64_8_curated
hypothetical protein n=1 Tax=Actinomadura atramentaria RepID=UPI0003681A22
NAD-dependent epimerase/dehydratase
13_1_20cm_4_scaffold_3869_trna_1
unknown

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9301..9375
DNA (75bp)
transferRNA
13_1_20cm_4_scaffold_3869_12
Methylobacter tundripaludum, Methylobacter, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(9673..9843)
DNA (171bp) protein (57aa)
Alkyl hydroperoxide reductase AhpD {ECO:0000256|SAAS:SAAS00088523}; EC=1.11.1.15 {ECO:0000256|SAAS:SAAS00088503};; TaxID=697282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales;
Displaying 13 items

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