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13_1_20cm_4_scaffold_51

Search features with annotation key words

Displaying items 1-30 of 119 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_51_1
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

1..405
DNA (405bp) protein (135aa)
sodium:dicarboxylate symporter n=1 Tax=Laceyella sacchari RepID=UPI0003B5CADE
sodium:dicarboxylate symporter Tax=RBG_16_Gemmatimonadetes_66_8_curated
sodium:dicarboxylate symporter
13_1_20cm_4_scaffold_51_2
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

402..1517
DNA (1116bp) protein (372aa)
Glycosyl transferase family 2 n=1 Tax=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) RepID=B4SCC1_PELPB
glycosyl transferase family 2 protein Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
glycosyl transferase family 2
13_1_20cm_4_scaffold_51_3
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(1514..2212)
DNA (699bp) protein (233aa)
High-affinity nickel-transporter protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A5F2_GEMAT
High-affinity nickel-transporter protein {ECO:0000313|EMBL:BAH37462.1}; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aura
high-affinity nickel-transporter protein
13_1_20cm_4_scaffold_51_4
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

2271..2822
DNA (552bp) protein (184aa)
RNA polymerase sigma factor n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AAG7_GEMAT
RNA polymerase ECF-type sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=RBG_16_Gemmatimonadetes_66_8_curated
RNA polymerase sigma factor, sigma-70 family
13_1_20cm_4_scaffold_51_5
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

2819..3481
DNA (663bp) protein (221aa)
hypothetical protein n=1 Tax=Aminicenantes bacterium SCGC AAA252-F08 RepID=UPI0003B5ED6C
Putative transmembrane anti-sigma factor Tax=RBG_16_Gemmatimonadetes_66_8_curated
13_1_20cm_4_scaffold_51_6
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

3494..4585
DNA (1092bp) protein (364aa)
hypothetical protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
hypothetical protein id=8266372 bin=CD_OP8_4m species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=CD_OP8_4m organism_group=OP8 (Aminicenantes)
hypothetical protein
13_1_20cm_4_scaffold_51_7
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

4599..5375
DNA (777bp) protein (259aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AAH0_GEMAT
hypothetical protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
protein of unknown function DUF4098
13_1_20cm_4_scaffold_51_8
RBG_16_Actinobacteria_67_10_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

5459..8455
DNA (2997bp) protein (999aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AAG4_GEMAT rbh
hypothetical protein Tax=RBG_16_Actinobacteria_67_10_curated
hypothetical protein
13_1_20cm_4_scaffold_51_9
RBG_16_Actinobacteria_67_10_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

8415..10703
DNA (2289bp) protein (763aa)
Putative helicase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AAG5_GEMAT
putative helicase Tax=RBG_16_Actinobacteria_67_10_curated
putative helicase
13_1_20cm_4_scaffold_51_10
RBG_16_Acidobacteria_68_9_curated, Acidobacteria, Bacteria

Not on your lists

10714..11364
DNA (651bp) protein (217aa)
pyrophosphatase PpaX; K06019 pyrophosphatase PpaX [EC:3.6.1.1] Tax=RBG_16_Acidobacteria_68_9_curated
pyrophosphatase n=1 Tax=Bacillus coahuilensis RepID=UPI000185134C
pyrophosphatase
13_1_20cm_4_scaffold_51_11
RBG_19FT_COMBO_Aminicenantes_58_17_curated, Aminicenantes, Bacteria

Not on your lists

11361..12353
DNA (993bp) protein (331aa)
aminotransferase (EC:2.6.1.-); K00837 [EC:2.6.1.-] Tax=RBG_19FT_COMBO_Aminicenantes_58_17_curated
aminotransferase (EC:2.6.1.-); K00837 [EC:2.6.1.-] id=24408260 bin=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
putative aminotransferase (EC:2.6.1.-)
13_1_20cm_4_scaffold_51_12
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

12708..13634
DNA (927bp) protein (309aa)
gapD; succinate semialdehyde dehydrogenase (EC:1.2.1.16) Tax=GWC2_Gemmatimonadetes_71_10_curated
gapD; succinate semialdehyde dehydrogenase (EC:1.2.1.16)
Succinate semialdehyde dehydrogenase n=1 Tax=Candidatus Nitrospira defluvii RepID=D8P812_9BACT
13_1_20cm_4_scaffold_51_13
RBG_16_Actinobacteria_67_10_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

comp(13638..14081)
DNA (444bp) protein (148aa)
Low-affinity inorganic phosphate transporter n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AB09_GEMAT
pit; low-affinity inorganic phosphate transporter; K03306 inorganic phosphate transporter, PiT family Tax=RBG_16_Actinobacteria_67_10_curated
pit; low-affinity inorganic phosphate transporter
13_1_20cm_4_scaffold_51_14
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(14033..14551)
DNA (519bp) protein (173aa)
phosphate transporter; K03306 inorganic phosphate transporter, PiT family Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
phosphate transporter; K03306 inorganic phosphate transporter, PiT family id=12555365 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
pit; low-affinity inorganic phosphate transporter
13_1_20cm_4_scaffold_51_15
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(14551..15165)
DNA (615bp) protein (205aa)
hypothetical protein; K07220 hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Putative phosphate transport regulator
Uncharacterized protein id=3055580 bin=GWA2_Elusimicrobia_69_24 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
13_1_20cm_4_scaffold_51_16
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

15235..16674
DNA (1440bp) protein (480aa)
Amino acid/polyamine/organocation transporter, APC superfamily n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1ILG4_KORVE
amino acid transporter Tax=RBG_16_Gemmatimonadetes_66_8_curated
amino acid transporter
13_1_20cm_4_scaffold_51_17
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

16816..17871
DNA (1056bp) protein (352aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AAH4_GEMAT
hypothetical protein Tax=GWC2_Gemmatimonadetes_71_10_curated
Radical SAM domain protein
13_1_20cm_4_scaffold_51_18
unknown

Not on your lists

comp(17868..18542)
DNA (675bp) protein (225aa)

This feature has no annotations

13_1_20cm_4_scaffold_51_19

Not on your lists

comp(18558..19526)
DNA (969bp) protein (323aa)
Conserved protein n=1 Tax=uncultured bacterium BAC-L1N9 RepID=Q4JIR8_9BACT
Conserved protein {ECO:0000313|EMBL:AHN97952.1}; TaxID=1447241 species="Bacteria; environmental samples.;" source="uncultured bacterium lac160.;"
hypothetical protein
13_1_20cm_4_scaffold_51_20
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

19609..20889
DNA (1281bp) protein (427aa)
DNA-directed DNA polymerase (EC:2.7.7.7); K14161 protein ImuB Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
DNA-directed DNA polymerase (EC:2.7.7.7)
DNA-directed DNA polymerase n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C5S3_SPHTD
13_1_20cm_4_scaffold_51_21
RBG_16_Actinobacteria_67_10_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

20838..21125
DNA (288bp) protein (96aa)
Uncharacterized protein n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C5S4_SPHTD
hypothetical protein Tax=RBG_16_Actinobacteria_67_10_curated
hypothetical protein
13_1_20cm_4_scaffold_51_22
RBG_16_Actinobacteria_67_10_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

21122..24427
DNA (3306bp) protein (1102aa)
DNA polymerase III subunit alpha (EC:2.7.7.7); K14162 error-prone DNA polymerase [EC:2.7.7.7] Tax=RBG_16_Actinobacteria_67_10_curated
DNA polymerase III subunit alpha (EC:2.7.7.7)
DNA polymerase III alpha subunit n=1 Tax=uncultured bacterium W5-102b RepID=H9BWL6_9BACT
13_1_20cm_4_scaffold_51_23
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

24424..25002
DNA (579bp) protein (193aa)
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
13_1_20cm_4_scaffold_51_24
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25038..25982
DNA (945bp) protein (315aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7DMD1_BRAJP
Uncharacterized protein {ECO:0000313|EMBL:KGT74371.1}; TaxID=375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japoni
hypothetical protein
13_1_20cm_4_scaffold_51_25
unknown

Not on your lists

26126..26908
DNA (783bp) protein (261aa)

This feature has no annotations

13_1_20cm_4_scaffold_51_26
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

26913..27449
DNA (537bp) protein (179aa)
peptide methionine sulfoxide reductase (EC:1.8.4.11); K07304 peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11] Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
peptide methionine sulfoxide reductase (EC:1.8.4.11); K07304 peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11] id=24524921 bin=RBG_19FT_COMBO_GAL15_69_19 species=Meiothermus ruber genus=Meiothermus taxon_order=Thermales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
methionine sulfoxide reductase A (EC:1.8.4.11)
13_1_20cm_4_scaffold_51_27
RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated, Acidobacteria, Bacteria

Not on your lists

comp(27446..31768)
DNA (4323bp) protein (1441aa)
DEAD/DEAH box helicase; K03724 ATP-dependent helicase Lhr and Lhr-like helicase [EC:3.6.4.-] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated
DEAD/H box helicase domain protein n=1 Tax=Pseudogulbenkiania sp. (strain NH8B) RepID=G2IVL6_PSEUL
DEAD/DEAH box helicase
13_1_20cm_4_scaffold_51_28
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(31797..32987)
DNA (1191bp) protein (397aa)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase n=1 Tax=uncultured bacterium BAC-L1N9 RepID=Q4JIR7_9BACT
Hydroxymethylbutenyl pyrophosphate reductase {ECO:0000313|EMBL:AHG91965.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
hydroxymethylbutenyl pyrophosphate reductase
13_1_20cm_4_scaffold_51_29
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(32992..34068)
DNA (1077bp) protein (359aa)
Gfo/Idh/MocA family oxidoreductase n=1 Tax=Myxococcus fulvus (strain ATCC BAA-855 / HW-1) RepID=F8CD05_MYXFH
Predicted dehydrogenase {ECO:0000313|EMBL:CDM66525.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
Gfo/Idh/MocA family oxidoreductase
13_1_20cm_4_scaffold_51_30
unknown

Not on your lists

comp(34065..34412)
DNA (348bp) protein (116aa)

This feature has no annotations

Displaying items 1-30 of 119 in total

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