ggKbase home page

13_1_20cm_4_scaffold_3039

Search features with annotation key words

Displaying 17 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_3039_1
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

Not on your lists

comp(221..835)
DNA (615bp) protein (205aa)
Tax=RBG_16_Euryarchaeota_67_27_curated
13_1_20cm_4_scaffold_3039_2
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

Not on your lists

comp(840..1391)
DNA (552bp) protein (184aa)
glyS; glycine--tRNA ligase (EC:6.1.1.14) Tax=RBG_16_Euryarchaeota_68_13_curated
Suspect SCG annotation. See neighboring gene [13_1_20cm_4_scaffold_3039_3].
Putative tRNA synthetase class II core domain (G, H, P, S and T) id=4930112 bin=PER_GWC2_41_7 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
hypothetical protein
13_1_20cm_4_scaffold_3039_3
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

Not on your lists


comp(1388..2230)
DNA (843bp) protein (281aa)
glyS; glycine--tRNA ligase (EC:6.1.1.14) Tax=RBG_16_Euryarchaeota_67_27_curated
Putative tRNA synthetase class II core domain (G, H, P, S and T) n=1 Tax=uncultured marine crenarchaeote HF4000_ANIW141O9 RepID=B3T652_9ARCH id=5103040 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
hypothetical protein
13_1_20cm_4_scaffold_3039_4
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

comp(2283..3296)
DNA (1014bp) protein (338aa)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI00035FA791
Cytosine deaminase-related metal-dependent hydrolase Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
Cytosine deaminase-related metal-dependent hydrolase
13_1_20cm_4_scaffold_3039_5
unknown

Not on your lists

comp(3359..3589)
DNA (231bp) protein (77aa)

This feature has no annotations

13_1_20cm_4_scaffold_3039_trna_1
unknown

Not on your lists

3461..3541
DNA (81bp)
transferRNA
13_1_20cm_4_scaffold_3039_6
R_OP11_Gottesmanbacteria_39_10, Gottesmanbacteria, Microgenomates, Bacteria

Not on your lists

comp(3586..4224)
DNA (639bp) protein (213aa)
Conserved hypothetical membrane protein containing DUF1211 n=1 Tax=uncultured archaeon RepID=D1JAZ2_9ARCH
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_OP11_Gottesmanbacteria_39_10_curated
putative integral membrane protein
13_1_20cm_4_scaffold_3039_7

Not on your lists

comp(4337..4639)
DNA (303bp) protein (101aa)
Uncharacterized protein n=1 Tax=Leptospira interrogans str. 2006001854 RepID=M6G6N9_LEPIR
Marine sediment metagenome DNA, contig: S06H3_S15003 {ECO:0000313|EMBL:GAI45414.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
hypothetical protein
13_1_20cm_4_scaffold_3039_8
unknown

Not on your lists

4766..5110
DNA (345bp) protein (115aa)

This feature has no annotations

13_1_20cm_4_scaffold_3039_9
unknown

Not on your lists

5284..6642
DNA (1359bp) protein (453aa)

This feature has no annotations

13_1_20cm_4_scaffold_3039_10
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(6662..8017)
DNA (1356bp) protein (452aa)
Hydroxymethylpyrimidine transporter n=1 Tax=Candidatus Caldiarchaeum subterraneum RepID=E6N615_9ARCH rbh
cytosine/purines uracil thiamine allantoin permease Tax=RBG_16_Euryarchaeota_68_12_curated
hydroxymethylpyrimidine transporter
13_1_20cm_4_scaffold_3039_11
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

comp(8072..9184)
DNA (1113bp) protein (371aa)
Phosphoglycerate kinase n=1 Tax=Aciduliprofundum sp. (strain MAR08-339) RepID=L0HJW3_ACIS0
3-phosphoglycerate kinase Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
3-phosphoglycerate kinase
13_1_20cm_4_scaffold_3039_12
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

9316..11475
DNA (2160bp) protein (720aa)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI000381A983
dnaA; chromosomal replication initiation protein; K02313 chromosomal replication initiator protein Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
chromosomal replication initiator protein dnaA
13_1_20cm_4_scaffold_3039_13
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

Not on your lists

comp(11487..13043)
DNA (1557bp) protein (519aa)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI000374747B
Tax=RBG_16_Euryarchaeota_68_13_curated
13_1_20cm_4_scaffold_3039_14
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

13097..13816
DNA (720bp) protein (240aa)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI0003724684
signal transduction ATPase Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
signal transduction ATPase
13_1_20cm_4_scaffold_3039_15
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

Not on your lists

13882..15021
DNA (1140bp) protein (380aa)
Uncharacterized protein n=1 Tax=Dactylellina haptotyla (strain CBS 200.50) RepID=S7ZYM6_DACHA
golgin subfamily A member 6-like protein 1-like Tax=RBG_16_Euryarchaeota_67_27_curated
hypothetical protein
13_1_20cm_4_scaffold_3039_16
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

15236..17458
DNA (2223bp) protein (741aa)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI00035E6352
hypothetical protein Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
Displaying 17 items

View Taxonomy