ggKbase home page

13_1_20cm_4_scaffold_1134

Search features with annotation key words

Displaying 9 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_1134_1
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists


comp(2..106)
DNA (105bp) protein (35aa)
50S ribosomal protein L13; K02871 large subunit ribosomal protein L13 Tax=GWA2_Rokubacteria_73_35_curated
50S ribosomal protein L13 id=2265654 bin=GWA2_Methylomirabilis_73_35 species=Bacillus azotoformans genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_1134_2
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(188..844)
DNA (657bp) protein (219aa)
nth; endonuclease III (EC:4.2.99.18) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
nth; endonuclease III (EC:4.2.99.18) id=14625396 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
nth; endonuclease III (EC:4.2.99.18)
13_1_20cm_4_scaffold_1134_3
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(857..3013)
DNA (2157bp) protein (719aa)
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
Putative uncharacterized protein id=2265650 bin=GWA2_Methylomirabilis_73_35 species=Caldilinea aerophila genus=Caldilinea taxon_order=Caldilineales taxon_class=Caldilineae phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_20cm_4_scaffold_1134_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(3010..3789)
DNA (780bp) protein (260aa)
methyltransferase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Methyltransferase id=2265648 bin=GWA2_Methylomirabilis_73_35 species=Cupriavidus necator genus=Cupriavidus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
type 12 methyltransferase
13_1_20cm_4_scaffold_1134_5
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(3786..4943)
DNA (1158bp) protein (386aa)
aspartate aminotransferase Tax=GWA2_Rokubacteria_73_35_curated
Aminotransferase class I and II id=2265644 bin=GWA2_Methylomirabilis_73_35 species=Desulfatibacillum alkenivorans genus=Desulfatibacillum taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
aspartate aminotransferase
13_1_20cm_4_scaffold_1134_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(4940..5662)
DNA (723bp) protein (241aa)
glycosyl transferase family 2 protein (EC:2.4.1.-); K00729 dolichyl-phosphate beta-glucosyltransferase [EC:2.4.1.117] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
glycosyl transferase family 2 protein (EC:2.4.1.-)
Glycosyl transferase, family 2 id=2265642 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_1134_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(5659..7092)
DNA (1434bp) protein (478aa)
malate dehydrogenase; K00027 malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
malate dehydrogenase; K00027 malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38] id=14625391 bin=bin7_NC10_sister species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin7_NC10_sister organism_group=NC10
malate dehydrogenase (EC:1.1.1.38)
13_1_20cm_4_scaffold_1134_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

7393..8886
DNA (1494bp) protein (498aa)
rpoD; RNA polymerase sigma factor rpoD; K03086 RNA polymerase primary sigma factor Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
RNA polymerase sigma factor id=3388592 bin=GWC2_Methylomirabilis_70_24 species=Plesiocystis pacifica genus=Plesiocystis taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
rpoD; RNA polymerase sigma factor rpoD
13_1_20cm_4_scaffold_1134_9
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(9033..9269)
DNA (237bp) protein (79aa)
amidase; K02433 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Amidase n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C277_SPHTD
amidase
Displaying 9 items

View Taxonomy