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13_1_20cm_4_scaffold_1228

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Displaying 12 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_1228_1
unknown

Not on your lists

comp(2..151)
DNA (150bp) protein (50aa)

This feature has no annotations

13_1_20cm_4_scaffold_1228_2
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(234..494)
DNA (261bp) protein (87aa)
id=14628038 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
id=14628038 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
13_1_20cm_4_scaffold_1228_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(491..1651)
DNA (1161bp) protein (387aa)
group 1 glycosyl transferase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Glycosyl transferase group 1 id=4745855 bin=GWA2_Methylomirabilis_73_35 species=Thermaerobacter marianensis genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
group 1 glycosyl transferase
13_1_20cm_4_scaffold_1228_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(1665..2168)
DNA (504bp) protein (168aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB id=4745854 bin=GWA2_Methylomirabilis_73_35 species=Ammonifex degensii genus=Ammonifex taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_20cm_4_scaffold_1228_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(2153..5077)
DNA (2925bp) protein (975aa)
tRNA-i(6)A37 thiotransferase enzyme MiaB; K06168 bifunctional enzyme involved in thiolation and methylation of tRNA Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB id=4527233 bin=GWF2_Methylomirabilis_70_14 species=Methylococcus capsulatus genus=Methylococcus taxon_order=Methylococcales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
tRNA-i(6)A37 modification enzyme MiaB
13_1_20cm_4_scaffold_1228_6
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

5204..6037
DNA (834bp) protein (278aa)
Putative sorbitol operon regulator n=1 Tax=Selenomonas sp. oral taxon 138 str. F0429 RepID=L1NDL1_9FIRM
DeoR family transcriptional regulator Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Transcriptional regulator contains sigma factor-related N-terminal domain
13_1_20cm_4_scaffold_1228_7
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(6047..7018)
DNA (972bp) protein (324aa)
accA; acetyl-Coa carboxylase, carboxytransferase subunit alpha (EC:6.4.1.2); K01962 acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2] Tax=GWA2_Rokubacteria_73_35_curated
Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha id=4208299 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
acetyl-CoA carboxylase subunit alpha
13_1_20cm_4_scaffold_1228_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(7002..10481)
DNA (3480bp) protein (1160aa)
dnaE; DNA polymerase III subunit alpha (EC:2.7.7.7) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
dnaE; DNA polymerase III subunit alpha (EC:2.7.7.7)
DNA polymerase III, alpha subunit id=4891633 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10 rbh
13_1_20cm_4_scaffold_1228_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(10536..12086)
DNA (1551bp) protein (517aa)
GMP synthase (EC:6.3.5.2); K01951 GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
GMP synthase (EC:6.3.5.2); K01951 GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] id=14625745 bin=bin7_NC10_sister species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
guaA; GMP synthase (EC:6.3.5.2)
13_1_20cm_4_scaffold_1228_10
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(12110..13270)
DNA (1161bp) protein (387aa)
guaB; IMP dehydrogenase/GMP reductase; K00088 IMP dehydrogenase [EC:1.1.1.205] Tax=GWA2_Rokubacteria_73_35_curated
IMP dehydrogenase family protein id=4208294 bin=GWA2_Methylomirabilis_73_35 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
guaB; IMP dehydrogenase/GMP reductase
13_1_20cm_4_scaffold_1228_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(13389..14171)
DNA (783bp) protein (261aa)
Baf family transcriptional acitvator (EC:2.7.1.33); K03525 type III pantothenate kinase [EC:2.7.1.33] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Type III pantothenate kinase id=4208293 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Desulforudis audaxviator genus=Candidatus Desulforudis taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Baf family transcriptional activator
13_1_20cm_4_scaffold_1228_12
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(14155..14625)
DNA (471bp) protein (157aa)
birA; bira bifunctional protein (EC:6.3.4.15); K03524 BirA family transcriptional regulator, biotin operon repressor / biotin-[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] Tax=GWA2_Rokubacteria_73_35_
Biotin operon repressor and biotin--acetyl-CoA carboxylase ligase id=4208292 bin=GWA2_Methylomirabilis_73_35 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
birA; biotin operon repressor and biotin--acetyl-CoA carboxylase ligase
Displaying 12 items

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