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13_1_20cm_4_scaffold_1504

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_1504_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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1..696
DNA (696bp) protein (232aa)
Integral membrane protein TerC n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DC43_9BACT
integral membrane protein TerC Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
integral membrane protein TerC
13_1_20cm_4_scaffold_1504_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

753..1475
DNA (723bp) protein (241aa)
GntR family transcriptional regulator; K05799 GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
transcriptional regulator id=14626765 bin=bin7_NC10_sister species=Desulfosporosinus acidiphilus genus=Desulfosporosinus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
FadR; transcriptional regulator
13_1_20cm_4_scaffold_1504_3
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

1800..4502
DNA (2703bp) protein (901aa)
ppdK; pyruvate phosphate dikinase (EC:2.7.9.1); K01006 pyruvate,orthophosphate dikinase [EC:2.7.9.1] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
pyruvate phosphate dikinase (EC:2.7.9.1); K01006 pyruvate,orthophosphate dikinase [EC:2.7.9.1] id=14626757 bin=bin7_NC10_sister species=Methanohalophilus mahii genus=Methanohalophilus taxon_order=Methanosarcinales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=bin7_NC10_sister organism_group=NC10 rbh
pyruvate phosphate dikinase (EC:2.7.9.1)
13_1_20cm_4_scaffold_1504_4
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

4495..5382
DNA (888bp) protein (296aa)
HOGA1, C10orf65; 4-hydroxy-2-oxoglutarate aldolase 1 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Uncharacterized protein id=4827367 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=Galliformes taxon_class=Aves phylum=Chordata tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
dihydrodipicolinate synthase/N-acetylneuraminate lyase
13_1_20cm_4_scaffold_1504_5
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

5395..6582
DNA (1188bp) protein (396aa)
ilvI; acetolactate synthase large subunit (EC:2.2.1.6); K01652 acetolactate synthase I/II/III large subunit [EC:2.2.1.6] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
ilvB; acetolactate synthase large subunit, biosynthetic type (EC:2.2.1.6)
Acetolactate synthase, large subunit id=3910682 bin=GWF2_Methylomirabilis_70_14 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_1504_6
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

6576..7004
DNA (429bp) protein (143aa)
ilvI; acetolactate synthase large subunit (EC:2.2.1.6); K01652 acetolactate synthase I/II/III large subunit [EC:2.2.1.6] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
ilvI; acetolactate synthase large subunit (EC:2.2.1.6); K01652 acetolactate synthase I/II/III large subunit [EC:2.2.1.6] id=24519536 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Thermodesulfatator atlanticus genus=Thermodesulfatator taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
ilvI; acetolactate synthase large subunit (AHAS) (Acetohydroxy-acid synthase large subunit) (ALS) (EC:2.2.1.6)
13_1_20cm_4_scaffold_1504_7
unknown

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comp(7106..7237)
DNA (132bp) protein (44aa)

This feature has no annotations

13_1_20cm_4_scaffold_1504_8
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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7310..7444
DNA (135bp) protein (45aa)
ilvH; acetolactate synthase 3 regulatory subunit; K01653 acetolactate synthase I/III small subunit [EC:2.2.1.6] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Acetolactate synthase, small subunit id=4827365 bin=GWC2_Methylomirabilis_70_16 species=Methanomethylovorans hollandica genus=Methanomethylovorans taxon_order=Methanosarcinales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_20cm_4_scaffold_1504_9
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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7478..8485
DNA (1008bp) protein (336aa)
ilvC; Ketol-acid reductoisomerase (Acetohydroxy-acid isomeroreductase) (Alpha-keto-beta-hydroxylacil reductoisomerase) (EC:1.1.1.86) Tax=GWA2_Rokubacteria_70_23_curated
ilvC; Ketol-acid reductoisomerase (Acetohydroxy-acid isomeroreductase) (Alpha-keto-beta-hydroxylacil reductoisomerase) (EC:1.1.1.86)
Ketol-acid reductoisomerase id=4800877 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good rbh
13_1_20cm_4_scaffold_1504_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

8489..9115
DNA (627bp) protein (209aa)
psd; phosphatidylserine decarboxylase (EC:4.1.1.65) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
psd; phosphatidylserine decarboxylase (EC:4.1.1.65)
Phosphatidylserine decarboxylase proenzyme id=3910763 bin=GWF2_Methylomirabilis_70_14 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_1504_11
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

9225..10019
DNA (795bp) protein (265aa)
CDP-diacylglycerol--serine O-phosphatidyltransferase; K00998 phosphatidylserine synthase [EC:2.7.8.8] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
CDP-diacylglycerol/serine O-phosphatidyltransferase id=3910764 bin=GWF2_Methylomirabilis_70_14 species=Geobacter lovleyi genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
CDP-diacylglycerol--serine O-phosphatidyltransferase
13_1_20cm_4_scaffold_1504_12
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

10034..11434
DNA (1401bp) protein (467aa)
leuA; 2-isopropylmalate synthase (Alpha-isopropylmalate synthase) (Alpha-IPM synthetase) (EC:2.3.3.13) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
2-isopropylmalate synthase; K01649 2-isopropylmalate synthase [EC:2.3.3.13] id=14626750 bin=bin7_NC10_sister species=Syntrophothermus lipocalidus genus=Syntrophothermus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
leuA2; 2-isopropylmalate synthase (EC:2.3.3.13)
13_1_20cm_4_scaffold_1504_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

11440..12525
DNA (1086bp) protein (362aa)
leuB; 3-isopropylmalate dehydrogenase (Beta-IPM dehydrogenase) (IMDH) (3-IPM-DH) (EC:1.1.1.85) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
3-isopropylmalate dehydrogenase id=4703436 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
3-isopropylmalate dehydrogenase
13_1_20cm_4_scaffold_1504_14
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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12525..13529
DNA (1005bp) protein (335aa)
asd; Aspartate-semialdehyde dehydrogenase (ASA dehydrogenase) (ASADH) (EC:1.2.1.11) Tax=GWA2_Rokubacteria_73_35_curated
asd; Aspartate-semialdehyde dehydrogenase (ASA dehydrogenase) (ASADH) (EC:1.2.1.11)
Aspartate-semialdehyde dehydrogenase id=3910768 bin=GWF2_Methylomirabilis_70_14 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_1504_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

13560..13886
DNA (327bp) protein (109aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=4703405 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_1504_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

13910..14629
DNA (720bp) protein (240aa)
truA; tRNA pseudouridine synthase A (EC:5.4.99.12); K06173 tRNA pseudouridine38-40 synthase [EC:5.4.99.12] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
tRNA pseudouridine synthase A (EC:5.4.99.12)
Pseudouridylate synthase I id=4703404 bin=GWA2_Methylomirabilis_73_35 species=Thermaerobacter subterraneus genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_1504_17
unknown

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14706..14975
DNA (270bp) protein (90aa)

This feature has no annotations

13_1_20cm_4_scaffold_1504_18
GWA2_Rhodocyclales_65_20_curated, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(15017..15334)
DNA (318bp) protein (106aa)
hypothetical protein n=1 Tax=Thioalkalivibrio sp. ALJ24 RepID=UPI000377DA02
thiol disulfide isomerase; K08481 circadian clock protein KaiB Tax=GWA2_Rhodocyclales_65_20_curated
KaiB domain-containing protein
13_1_20cm_4_scaffold_1504_19
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15337..16950)
DNA (1614bp) protein (538aa)
hypothetical protein n=1 Tax=Arhodomonas aquaeolei RepID=UPI000367295C
recombinase A; K08482 circadian clock protein KaiC Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
recombinase A
13_1_20cm_4_scaffold_1504_20
unknown

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17030..17233
DNA (204bp) protein (68aa)

This feature has no annotations

13_1_20cm_4_scaffold_1504_21
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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18161..18934
DNA (774bp) protein (258aa)
formate dehydrogenase family accessory protein (FdhD) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative formate dehydrogenase family accessory protein (FdhD) id=4703403 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
formate dehydrogenase family accessory protein (FdhD)
13_1_20cm_4_scaffold_1504_22
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

19099..19458
DNA (360bp) protein (120aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein id=4703402 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_1504_23
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

19544..19822
DNA (279bp) protein (93aa)
id=24540628 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
id=3227803 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
13_1_20cm_4_scaffold_1504_24
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

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19886..22831
DNA (2946bp) protein (982aa)
formate dehydrogenase major subunit; K00123 formate dehydrogenase, alpha subunit [EC:1.2.1.2] Tax=CSP1_6_Rokubacteria
formate dehydrogenase major subunit; K00123 formate dehydrogenase, alpha subunit [EC:1.2.1.2] id=14627927 bin=bin7_NC10_sister species=Caldalkalibacillus thermarum genus=Caldalkalibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
formate dehydrogenase subunit alpha
13_1_20cm_4_scaffold_1504_25
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

22834..23610
DNA (777bp) protein (259aa)
4Fe-4S ferredoxin; K00124 formate dehydrogenase, beta subunit Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
4Fe-4S ferredoxin; K00124 formate dehydrogenase, beta subunit id=14627926 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
4Fe-4S ferredoxin
13_1_20cm_4_scaffold_1504_26
R_NC10_66_22, NC10, Bacteria

Not on your lists

23610..24545
DNA (936bp) protein (312aa)
polysulfide reductase NrfD; K04015 protein NrfD Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
Polysulfide reductase NrfD; K04015 protein NrfD id=14627925 bin=bin7_NC10_sister species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
polysulfide reductase NrfD
13_1_20cm_4_scaffold_1504_27
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

24827..25405
DNA (579bp) protein (193aa)
formate dehydrogenase formation protein; K02380 FdhE protein Tax=GWA2_Rokubacteria_70_23_curated
Uncharacterized protein involved in formate dehydrogenase formation id=3227780 bin=GWC2_Methylomirabilis_70_24 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
formate dehydrogenase accessory protein
13_1_20cm_4_scaffold_1504_28
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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25472..26284
DNA (813bp) protein (271aa)
cytochrome c biogenesis protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
ResC/HemX-like cytochrome c biogenesis membrane protein id=3448980 bin=GWA2_Methylomirabilis_73_35 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ResC/HemX-like cytochrome c biogenesis membrane protein
13_1_20cm_4_scaffold_1504_29
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

26323..27591
DNA (1269bp) protein (423aa)
hemA; glutamyl-tRNA reductase; K02492 glutamyl-tRNA reductase [EC:1.2.1.70] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Glutamyl-tRNA reductase id=3448982 bin=GWA2_Methylomirabilis_73_35 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hemA; glutamyl-tRNA reductase
13_1_20cm_4_scaffold_1504_30
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

27800..28702
DNA (903bp) protein (301aa)
hemC; porphobilinogen deaminase (EC:2.5.1.61); K01749 hydroxymethylbilane synthase [EC:2.5.1.61] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Porphobilinogen deaminase id=3448984 bin=GWA2_Methylomirabilis_73_35 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Porphobilinogen deaminase
Displaying items 1-30 of 31 in total

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