ggKbase home page

13_1_20cm_4_scaffold_1558

Search features with annotation key words

Displaying 26 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_1558_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

2..799
DNA (798bp) protein (266aa)
class I fumarate hydratase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative Tartrate dehydratase beta subunit id=1746139 bin=GWA2_Methylomirabilis_73_35 species=alpha proteobacterium BAL199 genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
class I fumarate hydratase
13_1_20cm_4_scaffold_1558_2
unknown

Not on your lists

948..1223
DNA (276bp) protein (92aa)

This feature has no annotations

13_1_20cm_4_scaffold_1558_3
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

1247..1426
DNA (180bp) protein (60aa)
Putative thioredoxin Tax=GWA2_Rokubacteria_73_35_curated
Putative thioredoxin id=1746135 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Rhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_1558_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

1442..1756
DNA (315bp) protein (105aa)
ccdA; cytochrome c biogenesis protein CcdA Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Cytochrome c biogenesis protein, transmembrane region id=1746132 bin=GWA2_Methylomirabilis_73_35 species=ACD12 genus=ACD12 taxon_order=ACD12 taxon_class=ACD12 phylum=OP11 tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
thiol-disulfide isomerase-like thioredoxin
13_1_20cm_4_scaffold_1558_5
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

1753..3279
DNA (1527bp) protein (509aa)
integral membrane sensor signal transduction histidine kinase Tax=GWA2_Rokubacteria_73_35_curated
Integral membrane sensor signal transduction histidine kinase id=1746130 bin=GWA2_Methylomirabilis_73_35 species=Haliangium ochraceum genus=Haliangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
sensor histidine kinase
13_1_20cm_4_scaffold_1558_6
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

3272..3952
DNA (681bp) protein (227aa)
OmpR family response regulator; K07658 two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
DNA-binding response regulator id=1746127 bin=GWA2_Methylomirabilis_73_35 species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
OmpR family response regulator
13_1_20cm_4_scaffold_1558_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

3985..4998
DNA (1014bp) protein (338aa)
yedY; exported heme-molybdoenzyme molybdopterin-containing subunit YedY; TAT export Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Sulfoxide reductase catalytic subunit YedY id=1746038 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
yedY; exported heme-molybdoenzyme molybdopterin-containing subunit YedY; TAT export
13_1_20cm_4_scaffold_1558_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

4995..5471
DNA (477bp) protein (159aa)
yedZ; heme-molybdoenzyme heme-containing subunit YedZ; cytochrome b subunit Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Sulfoxide reductase heme-binding subunit YedZ id=1746036 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
yedZ; heme-molybdoenzyme heme-containing subunit YedZ; cytochrome b subunit
13_1_20cm_4_scaffold_1558_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

5515..6861
DNA (1347bp) protein (449aa)
M16B family peptidase (EC:3.4.24.-); K01417 [EC:3.4.24.-] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
processing peptidase (EC:3.4.24.64)
Putative Zn-dependent peptidase id=2874868 bin=GWC2_Methylomirabilis_70_16 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_20cm_4_scaffold_1558_10
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

6858..7604
DNA (747bp) protein (249aa)
processing peptidase (EC:3.4.24.64) id=14627604 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Cyanobacteria tax=bin7_NC10_sister organism_group=NC10
peptidase M16 domain-containing protein Tax=GWA2_Rokubacteria_73_35_curated
peptidase, M16 family
13_1_20cm_4_scaffold_1558_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

7601..8053
DNA (453bp) protein (151aa)
processing peptidase (EC:3.4.24.64) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Processing peptidase id=1746028 bin=GWA2_Methylomirabilis_73_35 species=Chroococcidiopsis thermalis genus=Chroococcidiopsis taxon_order=Pleurocapsales taxon_class=unknown phylum=Cyanobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
processing protease
13_1_20cm_4_scaffold_1558_12
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(8073..8267)
DNA (195bp) protein (65aa)
id=14627824 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
Tax=CSP1_6_Rokubacteria
13_1_20cm_4_scaffold_1558_13
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

8493..9359
DNA (867bp) protein (289aa)
putative VacJ-like lipoprotein; K04754 lipoprotein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative lipoprotein id=3461021 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
putative VacJ-like lipoprotein
13_1_20cm_4_scaffold_1558_14
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

9361..10299
DNA (939bp) protein (313aa)
hypothetical protein Tax=GWA2_Rokubacteria_70_23_curated
Putative uncharacterized protein id=2475294 bin=GWC2_Methylomirabilis_70_16 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
putative cytochrome c
13_1_20cm_4_scaffold_1558_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

10502..11668
DNA (1167bp) protein (389aa)
response regulator in two-component reguatory system, sigma54 dependent transcriptional regulator Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Two component, sigma54 specific, transcriptional regulator, Fis family id=3461023 bin=GWA2_Methylomirabilis_73_35 species=Desulfuromonas acetoxidans genus=Desulfuromonas taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
sigma-54-dependent transcriptional response regulator
13_1_20cm_4_scaffold_1558_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

11931..13526
DNA (1596bp) protein (532aa)
Pc22g03720 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=3461025 bin=GWA2_Methylomirabilis_73_35 species=Leishmania mexicana genus=Leishmania taxon_order=Kinetoplastida taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
autotransporter-associated beta strand repeat-containing protein
13_1_20cm_4_scaffold_1558_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

13938..15017
DNA (1080bp) protein (360aa)
Response regulator receiver modulated metal dependent phosphohydrolase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Response regulator receiver modulated metal dependent phosphohydrolase id=3461027 bin=GWA2_Methylomirabilis_73_35 species=Desulfarculus baarsii genus=Desulfarculus taxon_order=Desulfarculales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
metal dependent phosphohydrolase
13_1_20cm_4_scaffold_1558_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

15014..15388
DNA (375bp) protein (125aa)
spo0F; stage 0 sporulation protein F (EC:2.7.3.-); K02490 two-component system, response regulator, stage 0 sporulation protein F Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Sporulation initiation phosphotransferase F (Stage 0 sporulation protein F) id=3461031 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
response regulator receiver protein
13_1_20cm_4_scaffold_1558_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

15397..16191
DNA (795bp) protein (265aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Methyltransferase type 11 id=3461034 bin=GWA2_Methylomirabilis_73_35 species=Streptomyces hygroscopicus genus=Streptomyces taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
hypothetical protein
13_1_20cm_4_scaffold_1558_20
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

16195..17001
DNA (807bp) protein (269aa)
3-demethylubiquinone-9 3-methyltransferase (EC:2.1.1.64)
yqeM; methyltransferase domain protein Tax=GWA2_Rokubacteria_73_35_curated
Putative methyltransferase protein id=3461244 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Geobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_1558_21
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

17119..17787
DNA (669bp) protein (223aa)
acetyltransferase, ribosomal protein N-acetylase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
acetyltransferase id=14626494 bin=bin7_NC10_sister species=Paenibacillus polymyxa genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
acetyltransferase, ribosomal protein N-acetylase
13_1_20cm_4_scaffold_1558_22
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

17774..19777
DNA (2004bp) protein (668aa)
multi-sensor signal transduction histidine kinase (EC:2.7.13.3)
putative two-component hybrid sensor and regulator Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
GAF sensor signal transduction histidine kinase id=1890922 bin=GWA2_Methylomirabilis_73_35 species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_1558_23
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

19795..22476
DNA (2682bp) protein (894aa)
multi-sensor signal transduction histidine kinase (EC:2.7.3.-)
Multi-sensor signal transduction histidine kinase n=1 Tax=Anaeromyxobacter dehalogenans (strain 2CP-C) RepID=Q2IN10_ANADE
multi-sensor signal transduction histidine kinase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
13_1_20cm_4_scaffold_1558_24
unknown

Not on your lists

22757..23470
DNA (714bp) protein (238aa)

This feature has no annotations

13_1_20cm_4_scaffold_1558_25
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(23560..26982)
DNA (3423bp) protein (1141aa)
methionine synthase; K00548 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Methionine synthase id=4620328 bin=GWF2_Methylomirabilis_70_14 species=Kyrpidia tusciae genus=Kyrpidia taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
methionine synthase
13_1_20cm_4_scaffold_1558_26
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

26983..27471
DNA (489bp) protein (163aa)
dehydratase/racemase Tax=GWA2_Rokubacteria_73_35_curated
Putative dehydratase/racemase id=4472498 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Bordetella taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
dehydratase/racemase
Displaying 26 items

View Taxonomy