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13_1_20cm_4_scaffold_1770

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_1770_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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3..422
DNA (420bp) protein (140aa)
Vitamin B12 dependent methionine synthase activation region Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Vitamin B12 dependent methionine synthase id=4780179 bin=GWA2_Methylomirabilis_73_35 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Vitamin B12 dependent methionine synthase, activation domain protein
13_1_20cm_4_scaffold_1770_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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591..1115
DNA (525bp) protein (175aa)
shikimate dehydrogenase (EC:1.1.1.25) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
aroK; shikimate kinase I (EC:2.7.1.71)
Shikimate kinase id=4780140 bin=GWA2_Methylomirabilis_73_35 species=Dethiobacter alkaliphilus genus=Dethiobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_1770_3
R_Rokubacteria_69_13, Rokubacteria, Bacteria

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1099..2949
DNA (1851bp) protein (617aa)
bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase; K00547 homocysteine S-methyltransferase [EC:2.1.1.10] Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase; K00547 homocysteine S-methyltransferase [EC:2.1.1.10] id=14625090 bin=bin7_NC10_sister species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=bin7_NC10_sister organism_group=NC10
bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase
13_1_20cm_4_scaffold_1770_4
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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3302..4459
DNA (1158bp) protein (386aa)
Amidase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Amidase id=5037265 bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Amidase
13_1_20cm_4_scaffold_1770_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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4462..5508
DNA (1047bp) protein (349aa)
N-acyl-D-amino-acid deacylase; K06015 N-acyl-D-amino-acid deacylase [EC:3.5.1.81] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
N-acyl-D-amino-acid deacylase; K06015 N-acyl-D-amino-acid deacylase [EC:3.5.1.81] id=14625087 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
ndaD; d-aminoacylase (aspartate, glutamate ETC)
13_1_20cm_4_scaffold_1770_6
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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5505..5948
DNA (444bp) protein (148aa)
N-acyl-D-amino-acid deacylase (EC:3.5.1.81); K06015 N-acyl-D-amino-acid deacylase [EC:3.5.1.81] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
N-acyl-D-amino-acid deacylase (EC:3.5.1.81)
N-acyl-D-amino-acid deacylase id=5037264 bin=GWA2_Methylomirabilis_73_35 species=Thaumarchaeota archaeon SCGC AB-539-E09 genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_1770_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

5945..8986
DNA (3042bp) protein (1014aa)
multi-sensor signal transduction histidine kinase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
multi-sensor hybrid histidine kinase id=14625086 bin=bin7_NC10_sister species=Herpetosiphon aurantiacus genus=Herpetosiphon taxon_order=Herpetosiphonales taxon_class=Chloroflexi phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10 rbh
multi-sensor signal transduction histidine kinase
13_1_20cm_4_scaffold_1770_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

8983..10335
DNA (1353bp) protein (451aa)
two component sigma54 specific Fis family transcriptional regulator Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Fis family transcriptional regulator; K02481 two-component system, NtrC family, response regulator id=14625085 bin=bin7_NC10_sister species=Carboxydothermus hydrogenoformans genus=Carboxydothermus taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
Fis family two component sigma-54 specific transcriptional regulator
13_1_20cm_4_scaffold_1770_9
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

10486..10839
DNA (354bp) protein (118aa)
Transcriptional regulatory protein GlrR Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Transcriptional regulatory protein GlrR id=3708975 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_1770_10
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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10977..11360
DNA (384bp) protein (128aa)
putative RNA-binding protein RbpA Tax=GWA2_Rokubacteria_73_35_curated
RNP-1 like RNA-binding protein id=3708973 bin=GWA2_Methylomirabilis_73_35 species=ACD40 genus=ACD40 taxon_order=ACD40 taxon_class=ACD40 phylum=OP11 tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
RNP-1 like RNA-binding protein
13_1_20cm_4_scaffold_1770_11
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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comp(11460..13319)
DNA (1860bp) protein (620aa)
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
Putative uncharacterized protein id=3708972 bin=GWA2_Methylomirabilis_73_35 species=Bacillus sp. 2_A_57_CT2 genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
hypothetical protein
Displaying 11 items

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