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13_1_20cm_4_scaffold_220

Search features with annotation key words

Displaying 30 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_220_1
unknown

Not on your lists

comp(151..1152)
DNA (1002bp) protein (334aa)

This feature has no annotations

13_1_20cm_4_scaffold_220_2
unknown

Not on your lists

comp(1169..1618)
DNA (450bp) protein (150aa)

This feature has no annotations

13_1_20cm_4_scaffold_220_3
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(1659..2531)
DNA (873bp) protein (291aa)
ycjP; ABC transporter permease; K02026 multiple sugar transport system permease protein Tax=GWA2_Rokubacteria_73_35_curated
ABC transport system permease protein YcjP id=4964308 bin=GWA2_Methylomirabilis_73_35 species=Cupriavidus necator genus=Cupriavidus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Binding-protein-dependent transport systems inner membrane component
13_1_20cm_4_scaffold_220_4
Cupriavidus necator, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2531..3514)
DNA (984bp) protein (328aa)
ABC transport system permease protein y4oQ n=1 Tax=Cupriavidus necator (strain ATCC 43291 / DSM 13513 / N-1) RepID=G0ETE9_CUPNN
ABC transport system permease protein y4oQ {ECO:0000313|EMBL:AEI75620.1}; TaxID=1042878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source=
ABC transporter permease
13_1_20cm_4_scaffold_220_5
Nitrolancea hollandica, Nitrolancea, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

comp(3519..4850)
DNA (1332bp) protein (444aa)
Putative ABC-type sugar transport system,periplasmic-binding component n=1 Tax=Nitrolancetus hollandicus Lb RepID=I4EJ66_9CHLR
Putative ABC-type sugar transport system,periplasmic-binding component {ECO:0000313|EMBL:CCF84728.1}; TaxID=1129897 species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacteri
extracellular solute-binding protein
13_1_20cm_4_scaffold_220_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

4978..5358
DNA (381bp) protein (127aa)
id=3020265 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
id=3020265 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_220_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(5360..5578)
DNA (219bp) protein (73aa)
id=3742536 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
13_1_20cm_4_scaffold_220_8
Entamoeba histolytica, Entamoeba, Eukaryota

Not on your lists

comp(5673..6281)
DNA (609bp) protein (203aa)
Uncharacterized protein n=1 Tax=Entamoeba histolytica RepID=S0AZC5_ENTHI
Uncharacterized protein {ECO:0000313|EMBL:BAN39601.1}; TaxID=5759 species="Eukaryota; Amoebozoa; Archamoebae; Entamoebidae; Entamoeba.;" source="Entamoeba histolytica.;"
infB; Translation initiation factor IF-2
13_1_20cm_4_scaffold_220_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

6410..7312
DNA (903bp) protein (301aa)
2-hydroxyhepta-2,4-diene-1,7-dioate isomerase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase id=3020269 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Verminephrobacter taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
2-hydroxyhepta-2,4-diene-1,7-dioate isomerase
13_1_20cm_4_scaffold_220_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

7326..8537
DNA (1212bp) protein (404aa)
apgM; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (Phosphoglyceromutase) (BPG-independent PGAM) (aPGAM) (EC:5.4.2.1) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
apgM; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (Phosphoglyceromutase) (BPG-independent PGAM) (aPGAM) (EC:5.4.2.1)
Putative 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (Phosphoglyceromutase) (BPG-independent PGAM) (APGAM) id=3020272 bin=GWF2_Methylomirabilis_70_14 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_220_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

8801..9997
DNA (1197bp) protein (399aa)
aspartate ammonia-lyase (EC:4.2.1.2); K01744 aspartate ammonia-lyase [EC:4.3.1.1] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Fumarate hydratase class II id=4866639 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
aspartate ammonia-lyase
13_1_20cm_4_scaffold_220_12
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

10041..11051
DNA (1011bp) protein (337aa)
phosphoesterase domain-containing protein Tax=GWA2_Rokubacteria_70_23_curated
Phosphoesterase, RecJ domain protein id=4139262 bin=GWF2_Methylomirabilis_70_14 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
phosphoesterase domain-containing protein
13_1_20cm_4_scaffold_220_13
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

11053..12405
DNA (1353bp) protein (451aa)
Mg/Co/Ni transporter; K06213 magnesium transporter Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
magnesium transporter; K06213 magnesium transporter id=14626380 bin=bin7_NC10_sister species=Herpetosiphon aurantiacus genus=Herpetosiphon taxon_order=Herpetosiphonales taxon_class=Chloroflexi phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
Mg/Co/Ni transporter
13_1_20cm_4_scaffold_220_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

12516..13145
DNA (630bp) protein (210aa)
pmtA; phosphatidylethanolamine N-methyltransferase (EC:2.1.1.17) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
pmtA; phosphatidylethanolamine N-methyltransferase (EC:2.1.1.17)
Similar to phosphatidylethanolamine N-methyltransferase id=4866643 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
13_1_20cm_4_scaffold_220_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

13127..14122
DNA (996bp) protein (332aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=4866645 bin=GWA2_Methylomirabilis_73_35 species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_20cm_4_scaffold_220_16
GWC2_OD1_37_9_partial, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

14405..15037
DNA (633bp) protein (211aa)
Peptidase S8/S53 subtilisin kexin sedolisin n=1 Tax=uncultured Nitrospirae bacterium MY3-5B RepID=D9MP40_9BACT
Cell wall/surface repeat protein {ECO:0000313|EMBL:KKQ47105.1}; Flags: Fragment;; TaxID=1619028 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Yanofskybacteria) bacterium GW2011_GWC2_37_9.
hypothetical protein
13_1_20cm_4_scaffold_220_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(15098..16537)
DNA (1440bp) protein (480aa)
two component sigma54 specific Fis family transcriptional regulator Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Response regulator id=4232767 bin=GWC2_Methylomirabilis_70_16 species=Pelotomaculum thermopropionicum genus=Pelotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10 rbh
two component sigma54 specific Fis family transcriptional regulator
13_1_20cm_4_scaffold_220_18
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(16534..16935)
DNA (402bp) protein (134aa)
degQ; protease degQ (EC:3.4.21.-); K04772 serine protease DegQ [EC:3.4.21.-] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
trypsin domain/PDZ domain-containing protein; K01362 [EC:3.4.21.-] id=14626374 bin=bin7_NC10_sister species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
serine peptidase
13_1_20cm_4_scaffold_220_19
Magnetospirillum sp. SO-1, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16980..17441
DNA (462bp) protein (154aa)
Uncharacterized protein n=1 Tax=Magnetospirillum sp. SO-1 RepID=M3A8I6_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EME69093.1}; TaxID=1244869 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospi
13_1_20cm_4_scaffold_220_20
unknown

Not on your lists

17451..17555
DNA (105bp) protein (35aa)

This feature has no annotations

13_1_20cm_4_scaffold_220_21
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(17810..19183)
DNA (1374bp) protein (458aa)
tRNA(Ile)-lysidine synthetase; K04075 tRNA(Ile)-lysidine synthase [EC:6.3.4.19] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ATPase; tRNA(Ile)-lysidine synthase (EC:6.3.4.-)
tRNA(Ile)-lysidine synthase id=4681946 bin=GWA2_Methylomirabilis_73_35 species=Thermosinus carboxydivorans genus=Thermosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_220_22
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(19188..19859)
DNA (672bp) protein (224aa)
moaDE; molybdopterin converting factor, subunits 1/2; K03635 molybdopterin synthase catalytic subunit [EC:2.-.-.-] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
molybdopterin converting factor subunit 1; K03635 molybdopterin synthase catalytic subunit [EC:2.-.-.-] id=14626372 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=bin7_NC10_sister organism_group=NC10
MoaD family protein
13_1_20cm_4_scaffold_220_23
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(19874..20200)
DNA (327bp) protein (109aa)
iscA; iron-binding protein IscA (iron-sulfur cluster assembly protein) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Iron-binding protein IscA (Iron-sulfur cluster assembly protein) id=4681944 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
iscA; iron-binding protein IscA (iron-sulfur cluster assembly protein)
13_1_20cm_4_scaffold_220_24
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(20254..20985)
DNA (732bp) protein (244aa)
short chain dehydrogenase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
GTP cyclohydrolase I id=4681943 bin=GWA2_Methylomirabilis_73_35 species=unidentified genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
short chain dehydrogenase
13_1_20cm_4_scaffold_220_25
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(20982..22553)
DNA (1572bp) protein (524aa)
folE; GTP cyclohydrolase I (EC:3.5.4.16) Tax=GWA2_Rokubacteria_73_35_curated
GTP cyclohydrolase I id=4139273 bin=GWF2_Methylomirabilis_70_14 species=unidentified genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
Hypothetical protein
13_1_20cm_4_scaffold_220_26
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(22550..22954)
DNA (405bp) protein (135aa)
hypothetical protein; K01737 6-pyruvoyl tetrahydrobiopterin synthase [EC:4.2.3.12] Tax=GWA2_Rokubacteria_73_35_curated
6-carboxy-5,6,7,8-tetrahydropterin synthase id=4681942 bin=GWA2_Methylomirabilis_73_35 species=Gracilibacillus halophilus genus=Gracilibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_20cm_4_scaffold_220_27
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(22954..23364)
DNA (411bp) protein (137aa)
hypothetical protein; K01737 6-pyruvoyl tetrahydrobiopterin synthase [EC:4.2.3.12] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative uncharacterized protein id=4534447 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_20cm_4_scaffold_220_28
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(23361..24413)
DNA (1053bp) protein (351aa)
group 1 glycosyl transferase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Glycosyl transferase, group 1 id=4534448 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
group 1 glycosyl transferase
13_1_20cm_4_scaffold_220_29
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(24422..25204)
DNA (783bp) protein (261aa)
enoyl-CoA hydratase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Enoyl-CoA hydratase/isomerase id=4534449 bin=GWF2_Methylomirabilis_70_14 species=Mycobacterium tusciae genus=Mycobacterium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
enoyl-CoA hydratase/isomerase
13_1_20cm_4_scaffold_220_30
Candidatus Contendobacter odensis, Candidatus Contendobacter, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25547..27619
DNA (2073bp) protein (691aa)
Regulator of chromosome condensation RCC1 n=1 Tax=Chloroflexus aggregans (strain MD-66 / DSM 9485) RepID=B8G4X1_CHLAD
Uncharacterized protein {ECO:0000313|EMBL:CDH47537.1}; TaxID=1400861 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Contendobacter.;" source="Candidatus Contend
chromosome condensation regulator RCC1
Displaying 30 items

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