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13_1_20cm_4_scaffold_242

Search features with annotation key words

Displaying items 1-30 of 79 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_242_1
RBG_16_Anaeromyxobacter_69_14_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..175)
DNA (174bp) protein (58aa)
nitrite reductase small subunit; K00363 nitrite reductase (NAD(P)H) small subunit [EC:1.7.1.4] Tax=RBG_16_Anaeromyxobacter_69_14_curated
13_1_20cm_4_scaffold_242_2
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(175..357)
DNA (183bp) protein (61aa)
DSBA-like thioredoxin domain-containing protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
13_1_20cm_4_scaffold_242_3
unknown

Not on your lists

comp(622..819)
DNA (198bp) protein (66aa)

This feature has no annotations

13_1_20cm_4_scaffold_242_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

850..1305
DNA (456bp) protein (152aa)
DoxX family protein; K15977 putative oxidoreductase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
DoxX family protein id=3830283 bin=GWA2_Methylomirabilis_73_35 species=Geobacter lovleyi genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_20cm_4_scaffold_242_5
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(1319..2086)
DNA (768bp) protein (256aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein id=14627875 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_20cm_4_scaffold_242_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

2218..2859
DNA (642bp) protein (214aa)
hypothetical protein; K07147 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Molybdopterin binding protein id=3831000 bin=GWF2_Methylomirabilis_70_14 species=uncultured bacterium F25-01 genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_20cm_4_scaffold_242_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

2904..3581
DNA (678bp) protein (226aa)
Heavy metal response regulator n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PA26_9BACT
cztR; heavy metal response regulator; K07665 two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
cztR; heavy metal response regulator
13_1_20cm_4_scaffold_242_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

3593..4990
DNA (1398bp) protein (466aa)
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) RepID=A0LJT7_SYNFM rbh
integral membrane sensor signal transduction histidine kinase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
integral membrane sensor signal transduction histidine kinase
13_1_20cm_4_scaffold_242_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

5088..5807
DNA (720bp) protein (240aa)
TPR repeats containing protein n=1 Tax=Methanocella conradii (strain DSM 24694 / JCM 17849 / CGMCC 1.5162 / HZ254) RepID=H8I5V3_METCZ
TPR repeats containing protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
13_1_20cm_4_scaffold_242_10
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

5804..7201
DNA (1398bp) protein (466aa)
Serine protease do-like (EC:3.4.21.-) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Serine protease do-like (EC:3.4.21.-)
Putative Serine protease do-like n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MMR6_9BACT
13_1_20cm_4_scaffold_242_11
unknown

Not on your lists

7258..7371
DNA (114bp) protein (38aa)

This feature has no annotations

13_1_20cm_4_scaffold_242_12
unknown

Not on your lists

7380..8183
DNA (804bp) protein (268aa)

This feature has no annotations

13_1_20cm_4_scaffold_242_13
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(8212..9330)
DNA (1119bp) protein (373aa)
major facilitator superfamily protein Tax=GWA2_Rokubacteria_70_23_curated
Major facilitator superfamily MFS_1 id=3831007 bin=GWF2_Methylomirabilis_70_14 species=Paenibacillus vortex genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
arabinose efflux permease family protein
13_1_20cm_4_scaffold_242_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(9327..9539)
DNA (213bp) protein (71aa)
alpha/beta hydrolase fold protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
alpha/beta hydrolase fold protein id=14627593 bin=bin7_NC10_sister species=Acidovorax avenae genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_20cm_4_scaffold_242_15
unknown

Not on your lists

9734..10021
DNA (288bp) protein (96aa)

This feature has no annotations

13_1_20cm_4_scaffold_242_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

10047..10949
DNA (903bp) protein (301aa)
czcD; cation efflux system protein czcD; K03295 cation efflux system protein, CDF family Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Cobalt-zinc-cadmium resistance protein CzcD id=2973321 bin=GWF2_Methylomirabilis_70_14 species=Mesorhizobium sp. STM 4661 genus=Mesorhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
czcD; cation efflux system protein czcD
13_1_20cm_4_scaffold_242_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

10970..12514
DNA (1545bp) protein (515aa)
Altronate dehydratase (EC:4.2.1.7)
altronate dehydratase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
D-galactarate dehydratase/altronate hydrolase-like protein id=2696008 bin=GWC2_Methylomirabilis_70_16 species=Gemmata obscuriglobus genus=Gemmata taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_20cm_4_scaffold_242_18
RBG_16_Armatimonadetes_67_12_curated, Armatimonadetes, Bacteria

Not on your lists

12584..14173
DNA (1590bp) protein (530aa)
NHL repeat containing protein n=1 Tax=Chthonomonas calidirosea T49 RepID=S0EWM5_9BACT
NHL repeat containing protein Tax=RBG_16_Armatimonadetes_67_12_curated
cell surface protein
13_1_20cm_4_scaffold_242_19
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(14528..15820)
DNA (1293bp) protein (431aa)
putative acyl-CoA dehydrogenase; K00257 [EC:1.3.99.-] Tax=GWA2_Rokubacteria_73_35_curated
Acyl-CoA dehydrogenase id=3733084 bin=GWA2_Methylomirabilis_73_35 species=uncultured archaeon genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
acyl-CoA dehydrogenase
13_1_20cm_4_scaffold_242_20
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(15817..16362)
DNA (546bp) protein (182aa)
MaoC domain-containing protein dehydratase Tax=GWA2_Rokubacteria_73_35_curated
MaoC domain protein dehydratase id=3733090 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Frankia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
dehydratase
13_1_20cm_4_scaffold_242_21
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16371..16808)
DNA (438bp) protein (146aa)
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI0002FD8175
Uncharacterized protein {ECO:0000313|EMBL:EZP70823.1}; TaxID=13689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas pau
Hypothetical protein
13_1_20cm_4_scaffold_242_22
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(16799..18823)
DNA (2025bp) protein (675aa)
Isovaleryl-CoA dehydrogenase (EC:1.3.99.10) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Isovaleryl-CoA dehydrogenase id=2696015 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10 rbh
acyl-CoA dehydrogenase, N-terminal domain protein
13_1_20cm_4_scaffold_242_23
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(18906..19370)
DNA (465bp) protein (155aa)
twitching motility protein PilT n=1 Tax=Desulfitobacterium hafniense RepID=UPI0003764840
PilT-like protein Tax=GWA2_Rokubacteria_70_23_curated
twitching motility protein PilT
13_1_20cm_4_scaffold_242_24
RBG_13_Deltaproteobacteria_51_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19361..19606)
DNA (246bp) protein (82aa)
Marine sediment metagenome DNA, contig: S06H3_L00504 Tax=RBG_13_Deltaproteobacteria_51_10_curated
13_1_20cm_4_scaffold_242_25
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

19722..21200
DNA (1479bp) protein (493aa)
type I phosphodiesterase/nucleotide pyrophosphatase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Endonuclease/exonuclease/phosphatase id=3733094 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=Opitutae phylum=Verrucomicrobia tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_20cm_4_scaffold_242_26
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

21197..21958
DNA (762bp) protein (254aa)
endonuclease/exonuclease/phosphatase family protein; K06896 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Endonuclease/exonuclease/phosphatase id=3733096 bin=GWA2_Methylomirabilis_73_35 species=Herbaspirillum frisingense genus=Herbaspirillum taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ybhP; endonuclease/exonuclease/phosphatase
13_1_20cm_4_scaffold_242_27
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(21969..22265)
DNA (297bp) protein (99aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein id=4761905 bin=GWA2_Elusimicrobia_69_24 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
13_1_20cm_4_scaffold_242_28
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(22363..23586)
DNA (1224bp) protein (408aa)
amidase, hydantoinase/carbamoylase family (EC:3.5.1.87); K06016 N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.87] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
amidase, hydantoinase/carbamoylase family (EC:3.5.1.87)
Amidase, hydantoinase/carbamoylase family id=3733098 bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
13_1_20cm_4_scaffold_242_29
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(23603..24307)
DNA (705bp) protein (235aa)
livF; high-affinity branched-chain amino acid ABC transporter (ATP-binding protein) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
ABC transporter related id=3635567 bin=GWC2_Methylomirabilis_70_16 species=Thermosinus carboxydivorans genus=Thermosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
high-affinity branched-chain amino acid transport ATP-binding proteinlivF (LIV-I protein F)
13_1_20cm_4_scaffold_242_30
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(24294..25019)
DNA (726bp) protein (242aa)
lptB; ABC transporter ATP-binding protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
ABC transporter ATP-binding protein id=4387959 bin=GWC2_Methylomirabilis_70_24 species=Azospirillum brasilense genus=Azospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
livG; branched-chain amino acid transport system ATP-binding protein
Displaying items 1-30 of 79 in total

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