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13_1_20cm_4_scaffold_244

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_244_1
Bradyrhizobium sp. WSM1253, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..525)
DNA (525bp) protein (175aa)
PQQ-dependent dehydrogenase, methanol/ethanol family n=1 Tax=Bradyrhizobium sp. WSM1253 RepID=I2QL91_9BRAD
PQQ-dependent dehydrogenase, methanol/ethanol family {ECO:0000313|EMBL:EIG60547.1}; Flags: Precursor;; TaxID=319003 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiace
alcohol dehydrogenase
13_1_20cm_4_scaffold_244_2
Thermobaculum terrenum, Thermobaculum, Bacteria

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702..1625
DNA (924bp) protein (308aa)
Ornithine cyclodeaminase {ECO:0000313|EMBL:ACZ43638.1}; EC=4.3.1.12 {ECO:0000313|EMBL:ACZ43638.1};; TaxID=525904 species="Bacteria; Thermobaculum.;" source="Thermobaculum terrenum (strain ATCC BAA-798
ornithine cyclodeaminase (EC:4.3.1.12)
Ornithine cyclodeaminase n=1 Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CIR8_THET1 rbh
13_1_20cm_4_scaffold_244_3
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1723..2364
DNA (642bp) protein (214aa)
Isochorismatase hydrolase n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TN62_MESCW
Isochorismatase hydrolase {ECO:0000313|EMBL:ADV11620.1}; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ci
isochorismatase hydrolase
13_1_20cm_4_scaffold_244_4
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2378..3574
DNA (1197bp) protein (399aa)
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI00030EEEE0 rbh
Putative aliphatic amidase expression-regulating protein {ECO:0000313|EMBL:CDX54735.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobi
aliphatic amidase expression-regulating protein
13_1_20cm_4_scaffold_244_5
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3594..4352
DNA (759bp) protein (253aa)
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI0002D40CA2
Putative high-affinity branched-chain amino acid transport ATP-binding protein {ECO:0000313|EMBL:CDX43816.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobac
high-affinity branched-chain amino acid transport ATP-binding protein
13_1_20cm_4_scaffold_244_6
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4374..5078
DNA (705bp) protein (235aa)
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI0002E15B08
High-affinity branched-chain amino acid transport ATP-binding protein BraG {ECO:0000313|EMBL:CDX28409.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteri
high-affinity branched-chain amino acid transport ATP-binding protein
13_1_20cm_4_scaffold_244_7
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5090..5944
DNA (855bp) protein (285aa)
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI000303F159 rbh
Putative high-affinity branched-chain amino acid transport system permease protein {ECO:0000313|EMBL:CDX54729.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyll
high-affinity branched-chain amino acid transport system permease
13_1_20cm_4_scaffold_244_8
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5946..6944
DNA (999bp) protein (333aa)
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI0002F7AA9A rbh
Putative high-affinity branched-chain amino acid transport system permease protein {ECO:0000313|EMBL:CDX43807.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyll
high-affinity branched-chain amino acid transport system permease
13_1_20cm_4_scaffold_244_9
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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7123..7677
DNA (555bp) protein (185aa)
putative dioxygenase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative uncharacterized protein id=1773285 bin=GWD2_Deltaproteobacteria_55_8 species=Pyrobaculum oguniense genus=Pyrobaculum taxon_order=Thermoproteales taxon_class=Thermoprotei phylum=Crenarchaeota tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
protocatechuate 4,5-dioxygenase subunit beta
13_1_20cm_4_scaffold_244_10
unknown

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7674..7910
DNA (237bp) protein (79aa)

This feature has no annotations

13_1_20cm_4_scaffold_244_11
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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comp(7961..8416)
DNA (456bp) protein (152aa)
dipeptidyl aminopeptidase; K06978 Tax=GWA2_Rokubacteria_73_35_curated
Hydrolase CocE/NonD family protein id=4827668 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Rhodococcus taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_20cm_4_scaffold_244_12
unknown

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comp(8413..9672)
DNA (1260bp) protein (420aa)

This feature has no annotations

13_1_20cm_4_scaffold_244_13
RBG_16_Deltaproteobacteria_47_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9757..10413
DNA (657bp) protein (219aa)
Uncharacterized protein n=1 Tax=Bacteroides dorei CL03T12C01 RepID=I8WBY9_9BACE
hypothetical protein Tax=RBG_16_Deltaproteobacteria_47_11_curated
hypothetical protein
13_1_20cm_4_scaffold_244_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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comp(10446..11438)
DNA (993bp) protein (331aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Oxidoreductase family protein id=4827670 bin=GWA2_Methylomirabilis_73_35 species=Roseomonas cervicalis genus=Roseomonas taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
hypothetical protein
13_1_20cm_4_scaffold_244_15
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

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11568..13055
DNA (1488bp) protein (496aa)
amidohydrolase n=1 Tax=Scytonema hofmanni RepID=UPI0003465913
hypothetical protein Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
hypothetical protein
13_1_20cm_4_scaffold_244_16
CSP1_5_NC10, NC10, Bacteria

Not on your lists

comp(13013..14143)
DNA (1131bp) protein (377aa)
adenylate/guanylate cyclase Tax=CSP1_5_NC10
adenylate/guanylate cyclase id=14429036 bin=bin3_NC10 species=Methyloferula stellata genus=Methyloferula taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin3_NC10 organism_group=NC10
adenylate/guanylate cyclase
13_1_20cm_4_scaffold_244_17
R_Rokubacteria_68_19, Rokubacteria, Bacteria

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comp(14152..14589)
DNA (438bp) protein (146aa)
sor; rubredoxin superoxide reductase (1-Fe-SOR) (EC:1.15.1.2); K05919 superoxide reductase [EC:1.15.1.2] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
desulfoferrodoxin ferrous iron-binding region; K05919 superoxide reductase [EC:1.15.1.2] id=14627204 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Poribacteria tax=bin7_NC10_sister organism_group=NC10
sor; rubredoxin superoxide reductase (1-Fe-SOR) (EC:1.15.1.2)
13_1_20cm_4_scaffold_244_18
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(14607..14981)
DNA (375bp) protein (125aa)
response regulator in two-component regulatory system (CheY-like protein) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
response regulator in two-component regulatory system (CheY-like protein) id=14627203 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
response regulator in two-component regulatory system (CheY-like protein)
13_1_20cm_4_scaffold_244_19
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(14978..16594)
DNA (1617bp) protein (539aa)
histidine kinase (EC:2.7.13.3) Tax=CSP1_6_Rokubacteria
histidine kinase (EC:2.7.13.3) id=14627202 bin=bin7_NC10_sister species=Leptothrix cholodnii genus=Leptothrix taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
histidine kinase (EC:2.7.13.3)
13_1_20cm_4_scaffold_244_20
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(16613..17317)
DNA (705bp) protein (235aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
hypothetical protein id=14627205 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_20cm_4_scaffold_244_21
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

17747..18172
DNA (426bp) protein (142aa)
Fimbrial protein pilin Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative Fimbrial protein pilin id=4953732 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Fimbrial protein pilin
13_1_20cm_4_scaffold_244_22
Aureimonas altamirensis, Aureimonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18291..20258)
DNA (1968bp) protein (656aa)
hypothetical protein n=1 Tax=Candidatus Poribacteria sp. WGA-4E RepID=UPI0003649073 rbh
N-methylproline demethylase {ECO:0000313|EMBL:KHJ56160.1}; TaxID=370622 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Aureimonas.;" source="Aureimonas altamir
NADH:flavin oxidoreductase
13_1_20cm_4_scaffold_244_23
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(20505..21167)
DNA (663bp) protein (221aa)
Lytic transglycosylase, catalytic Tax=GWA2_Rokubacteria_70_23_curated
Lytic transglycosylase, catalytic id=4686850 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
lytic transglycosylase, catalytic
13_1_20cm_4_scaffold_244_24
GWA2_Rhodocyclales_65_20_curated, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(21633..23579)
DNA (1947bp) protein (649aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000367495D rbh
putative prolin-rich exported protein Tax=GWA2_Rhodocyclales_65_20_curated
hypothetical protein
13_1_20cm_4_scaffold_244_25
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

23836..24078
DNA (243bp) protein (81aa)
CopG family transcriptional regulator Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
CopG family transcriptional regulator id=16988688 bin=RBG_16_Aminicenantes_63_14 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG_16_Aminicenantes_63_14 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
hypothetical protein
Displaying 25 items

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