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13_1_20cm_4_scaffold_351

Search features with annotation key words

Displaying items 1-30 of 34 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_351_trna_3
unknown

Not on your lists

comp(6..97)
DNA (92bp)
transferRNA
13_1_20cm_4_scaffold_351_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

286..951
DNA (666bp) protein (222aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=24594421 bin=RBG_19FT_COMBO_GAL15_69_19 species=Herbaspirillum sp. JC206 genus=Herbaspirillum taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
hypothetical protein
13_1_20cm_4_scaffold_351_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(997..1428)
DNA (432bp) protein (144aa)
tRNA-specific adenosine deaminase (EC:3.5.4.-)
CMP/dCMP deaminase zinc-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
CMP/dCMP deaminase zinc-binding protein id=5017005 bin=GWA2_Methylomirabilis_73_35 species=Alicycliphilus denitrificans genus=Alicycliphilus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_351_3
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

1520..2446
DNA (927bp) protein (309aa)
binding-protein-dependent transport system inner membrane protein; K15581 oligopeptide transport system permease protein Tax=GWA2_Rokubacteria_70_23_curated
Binding-protein-dependent transport systems inner membrane component id=3741105 bin=GWF2_Methylomirabilis_70_14 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
binding-protein-dependent transport system inner membrane protein
13_1_20cm_4_scaffold_351_4
unknown

Not on your lists

comp(2768..2980)
DNA (213bp) protein (71aa)

This feature has no annotations

13_1_20cm_4_scaffold_351_5
unknown

Not on your lists

comp(2977..3117)
DNA (141bp) protein (47aa)

This feature has no annotations

13_1_20cm_4_scaffold_351_6
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

3247..4983
DNA (1737bp) protein (579aa)
oligopeptide ABC transporter periplasmic oligopeptide-binding protein; K02035 peptide/nickel transport system substrate-binding protein Tax=GWA2_Rokubacteria_70_23_curated
Oligopeptide ABC transporter periplasmic oligopeptide-binding protein id=3741107 bin=GWF2_Methylomirabilis_70_14 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
family 5 extracellular solute-binding protein
13_1_20cm_4_scaffold_351_7
unknown

Not on your lists

4991..5368
DNA (378bp) protein (126aa)

This feature has no annotations

13_1_20cm_4_scaffold_351_8
unknown

Not on your lists

comp(5379..5747)
DNA (369bp) protein (123aa)

This feature has no annotations

13_1_20cm_4_scaffold_351_9
GWB1_OD1_49_6_curated, Parcubacteria, Bacteria

Not on your lists

comp(5802..6731)
DNA (930bp) protein (310aa)
hypothetical protein n=1 Tax=Methylobacter marinus RepID=UPI00038247DC
metallophosphoesterase Tax=GWB1_OD1_49_6_curated
repeat-containing protein
13_1_20cm_4_scaffold_351_trna_2
unknown

Not on your lists

comp(6969..7042)
DNA (74bp)
transferRNA
13_1_20cm_4_scaffold_351_trna_1
unknown

Not on your lists

comp(7047..7137)
DNA (91bp)
transferRNA
13_1_20cm_4_scaffold_351_10
Desulfovibrio sp. X2, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7205..7675
DNA (471bp) protein (157aa)
ABC transporter domain-containing protein n=1 Tax=Desulfovibrio sp. X2 RepID=S7U4A5_9DELT
ABC transporter domain-containing protein {ECO:0000313|EMBL:EPR44281.1}; TaxID=941449 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;"
ABC transporter ATP-binding protein
13_1_20cm_4_scaffold_351_11
Desulfovibrio sp. X2, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7630..8817
DNA (1188bp) protein (396aa)
ABC transporter domain-containing protein n=1 Tax=Desulfovibrio sp. X2 RepID=S7U4A5_9DELT
ABC transporter domain-containing protein {ECO:0000313|EMBL:EPR44281.1}; TaxID=941449 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;"
ABC transporter ATP-binding protein
13_1_20cm_4_scaffold_351_12
Achromobacter piechaudii, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8807..9655)
DNA (849bp) protein (283aa)
ABC transporter, permease protein n=1 Tax=Achromobacter piechaudii ATCC 43553 RepID=D4XBQ4_9BURK
ABC transporter, permease protein {ECO:0000313|EMBL:EFF75840.1}; TaxID=742159 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromoba
gsiD2; glutathione transporter permease GsiD 2
13_1_20cm_4_scaffold_351_13
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

comp(9655..10599)
DNA (945bp) protein (315aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C1J9_SPHTD
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ACZ38116.1}; Flags: Precursor;; TaxID=479434 species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales
binding-protein-dependent transport system inner membrane protein
13_1_20cm_4_scaffold_351_14
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

comp(10606..12126)
DNA (1521bp) protein (507aa)
Extracellular solute-binding protein family 5 n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C1K0_SPHTD
Extracellular solute-binding protein family 5 {ECO:0000313|EMBL:ACZ38117.1}; TaxID=479434 species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae;
family 5 extracellular solute-binding protein
13_1_20cm_4_scaffold_351_15
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

12317..12460
DNA (144bp) protein (48aa)
phenylacetic acid degradation protein PaaD; K02614 acyl-CoA thioesterase [EC:3.1.2.-] Tax=GWA2_Rokubacteria_73_35_curated
Thioesterase superfamily protein id=5017002 bin=GWA2_Methylomirabilis_73_35 species=Kyrpidia tusciae genus=Kyrpidia taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_351_16
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

12450..14153
DNA (1704bp) protein (568aa)
metallo-dependent hydrolase Tax=GWA2_Rokubacteria_73_35_curated
Putative uncharacterized protein id=5017001 bin=GWA2_Methylomirabilis_73_35 species=uncultured marine microorganism HF4000_ANIW93N21 genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
metal-dependent hydrolase
13_1_20cm_4_scaffold_351_17
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

14289..14483
DNA (195bp) protein (65aa)
Uncharacterized protein {ECO:0000313|EMBL:CBK43953.1}; TaxID=330214 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
13_1_20cm_4_scaffold_351_18
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14502..15002)
DNA (501bp) protein (167aa)
Uncharacterized protein n=1 Tax=Oceanibaculum indicum P24 RepID=K2IN42_9PROT
hypothetical protein Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
hypothetical protein
13_1_20cm_4_scaffold_351_19
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(15029..15436)
DNA (408bp) protein (136aa)
id=14425130 Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
id=14425130 bin=bin1_lowGC tax=bin1_lowGC organism_group=Unknown_CP
13_1_20cm_4_scaffold_351_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(15662..16756)
DNA (1095bp) protein (365aa)
putative peptidase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative Peptidase, family M48 id=2413282 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
putative peptidase
13_1_20cm_4_scaffold_351_21
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(16759..17862)
DNA (1104bp) protein (368aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=2413283 bin=GWA2_Methylomirabilis_73_35 species=Nitrococcus mobilis genus=Nitrococcus taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
hypothetical protein
13_1_20cm_4_scaffold_351_22
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(18000..20315)
DNA (2316bp) protein (772aa)
xanthine dehydrogenase, molybdenum binding subunit apoprotein (EC:1.17.1.4) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
xanthine dehydrogenase, molybdenum binding subunit apoprotein (EC:1.17.1.4)
Xanthine dehydrogenase, molybdenum binding subunit apoprotein id=3162221 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_20cm_4_scaffold_351_23
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(20312..20830)
DNA (519bp) protein (173aa)
hypothetical protein n=1 Tax=Amycolatopsis methanolica RepID=UPI00036C43EB
cupin region Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
cupin region
13_1_20cm_4_scaffold_351_24
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

20877..21389
DNA (513bp) protein (171aa)
two-component system sensor protein (EC:2.7.3.-) Tax=GWA2_Rokubacteria_73_35_curated
cetoacetate metabolism regulatory protein atoC id=2772883 bin=GWA2_Methylomirabilis_73_35 species=Gemmata obscuriglobus genus=Gemmata taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
two-component, sigma-54 specific, transcriptional regulator, Fis family
13_1_20cm_4_scaffold_351_25
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(21393..22979)
DNA (1587bp) protein (529aa)
putative histidine kinase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Histidine kinase id=4849342 bin=GWC2_Methylomirabilis_70_16 species=Aromatoleum aromaticum genus=Aromatoleum taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
histidine kinase
13_1_20cm_4_scaffold_351_26
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(23216..24046)
DNA (831bp) protein (277aa)
alpha/beta hydrolase fold protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Predicted hydrolases or acyltransferases (Alpha/beta hydrolase superfamily) id=4527544 bin=GWC2_Methylomirabilis_70_16 species=uncultured Chloroflexi bacterium HF0200_06I16 genus=unknown taxon_order=unknown taxon_class=unknown phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
13_1_20cm_4_scaffold_351_27
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(24087..24389)
DNA (303bp) protein (101aa)
id=4657425 Tax=GWA2_Rokubacteria_70_23_curated
id=4657425 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Displaying items 1-30 of 34 in total

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