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13_1_20cm_4_scaffold_57

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Displaying items 1-30 of 32 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_57_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(114..602)
DNA (489bp) protein (163aa)
smpB; SsrA-binding protein; K03664 SsrA-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
SsrA-binding protein id=2862716 bin=GWF2_Methylomirabilis_70_14 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
smpB; SsrA-binding protein
13_1_20cm_4_scaffold_57_trna_1
unknown

Not on your lists

635..718
DNA (84bp)
transferRNA
13_1_20cm_4_scaffold_57_2
RBG_16_NC10_65_8_curated, NC10, Bacteria

Not on your lists

comp(770..1312)
DNA (543bp) protein (181aa)
hypothetical protein Tax=RBG_16_NC10_65_8_curated
13_1_20cm_4_scaffold_57_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(1383..2345)
DNA (963bp) protein (321aa)
oxidoreductase domain-containing protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Oxidoreductase domain protein id=2319273 bin=GWA2_Methylomirabilis_73_35 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
oxidoreductase-like protein
13_1_20cm_4_scaffold_57_4
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(2353..3090)
DNA (738bp) protein (246aa)
family 2 glycosyl transferase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Glycosyltransferase id=2319272 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Kuenenia stuttgartiensis genus=Candidatus Kuenenia taxon_order=Candidatus Brocadiales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
family 2 glycosyl transferase
13_1_20cm_4_scaffold_57_5
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(3083..3673)
DNA (591bp) protein (197aa)
3-octaprenyl-4-hydroxybenzoate carboxy-lyase; K03186 3-octaprenyl-4-hydroxybenzoate carboxy-lyase UbiX [EC:4.1.1.-] Tax=GWA2_Rokubacteria_73_35_curated
ubiX; 3-polyprenyl-4-hydroxybenzoate carboxy-lyase UbiX (EC:4.1.1.-)
3-polyprenyl-4-hydroxybenzoate decarboxylase id=2319271 bin=GWA2_Methylomirabilis_73_35 species=Citrobacter freundii genus=Citrobacter taxon_order=Enterobacteriales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_57_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(3673..3948)
DNA (276bp) protein (92aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=14625277 bin=bin7_NC10_sister species=Nitrospina sp. SCGC AAA288-L16 genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_20cm_4_scaffold_57_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(3948..4226)
DNA (279bp) protein (93aa)
Putative uncharacterized protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=3299399 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_20cm_4_scaffold_57_8
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(4261..5730)
DNA (1470bp) protein (490aa)
integral membrane sensor signal transduction histidine kinase; K11357 two-component system, cell cycle sensor histidine kinase DivJ [EC:2.7.13.3] Tax=GWA2_Rokubacteria_73_35_curated
osmosensitive K+ channel signal transduction histidine kinase (EC:2.7.3.-)
Integral membrane sensor signal transduction histidine kinase id=3299505 bin=GWA2_Methylomirabilis_73_35 species=Xanthobacter autotrophicus genus=Xanthobacter taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
13_1_20cm_4_scaffold_57_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(5727..6536)
DNA (810bp) protein (270aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=3299507 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_57_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(6547..7242)
DNA (696bp) protein (232aa)
PAS/PAC sensor-containing diguanylate cyclase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Diguanylate cyclase with PAS/PAC sensor id=3299509 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Desulforudis audaxviator genus=Candidatus Desulforudis taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
PAS/PAC sensor-containing diguanylate cyclase
13_1_20cm_4_scaffold_57_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(7227..7613)
DNA (387bp) protein (129aa)
ompR; response regulator receiver Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Two component transcriptional regulator, winged helix family id=3299511 bin=GWA2_Methylomirabilis_73_35 species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
response regulator with CheY-like receiver domain and winged-helix DNA-binding domain
13_1_20cm_4_scaffold_57_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(7788..8201)
DNA (414bp) protein (138aa)
atpC; ATP synthase subunit epsilon, membrane-bound, F1 sector (EC:3.6.3.14) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
atpC; ATP synthase subunit epsilon, membrane-bound, F1 sector (EC:3.6.3.14)
ATP synthase epsilon chain id=3299513 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_57_13
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(8201..9622)
DNA (1422bp) protein (474aa)
atpD; ATP synthase subunit beta, membrane-bound, F1 sector (EC:3.6.3.14) Tax=GWA2_Rokubacteria_73_35_curated
atpD; ATP synthase subunit beta, membrane-bound, F1 sector (EC:3.6.3.14)
ATP synthase subunit beta id=3212391 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_20cm_4_scaffold_57_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(9619..10503)
DNA (885bp) protein (295aa)
atpG; ATP synthase subunit gamma, membrane-bound, F1 sector (EC:3.6.3.14) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
atpG; ATP synthase subunit gamma, membrane-bound, F1 sector (EC:3.6.3.14)
ATP synthase gamma chain id=2324964 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
13_1_20cm_4_scaffold_57_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(10517..12043)
DNA (1527bp) protein (509aa)
atpA; ATP synthase subunit alpha, membrane-bound, F1 sector (EC:3.6.3.14) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
atpA; ATP synthase subunit alpha, membrane-bound, F1 sector (EC:3.6.3.14)
ATP synthase subunit alpha id=3212395 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_20cm_4_scaffold_57_16
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(12040..12588)
DNA (549bp) protein (183aa)
F0F1 ATP synthase subunit delta (EC:3.6.3.14); K02113 F-type H+-transporting ATPase subunit delta [EC:3.6.3.14] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
ATP synthase subunit delta id=2324962 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ATP synthase F0F1 subunit delta
13_1_20cm_4_scaffold_57_17
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(12595..13200)
DNA (606bp) protein (202aa)
Sodium-transporting two-sector ATPase (EC:3.6.3.15) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Sodium-transporting two-sector ATPase (EC:3.6.3.15)
ATP synthase subunit b id=2324961 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_57_18
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(13292..14374)
DNA (1083bp) protein (361aa)
tRNA-specific 2-thiouridylase mnmA; K00566 tRNA-specific 2-thiouridylase [EC:2.8.1.-] Tax=GWA2_Rokubacteria_73_35_curated
tRNA-specific 2-thiouridylase MnmA id=2324960 bin=GWA2_Methylomirabilis_73_35 species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
tRNA-specific 2-thiouridylase mnmA
13_1_20cm_4_scaffold_57_19
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(14401..15255)
DNA (855bp) protein (285aa)
chromosome segregation DNA-binding protein; K03497 chromosome partitioning protein, ParB family Tax=GWA2_Rokubacteria_73_35_curated
Chromosome segregation DNA-binding protein id=2324959 bin=GWA2_Methylomirabilis_73_35 species=Thermosediminibacter oceani genus=Thermosediminibacter taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ParB-like nuclease domain-containing protein
13_1_20cm_4_scaffold_57_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(15248..16054)
DNA (807bp) protein (269aa)
soj1; sporulation initiation inhibitor protein Soj Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Chromosome partitioning ATPase Soj id=2324958 bin=GWA2_Methylomirabilis_73_35 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
hypothetical protein
13_1_20cm_4_scaffold_57_21
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(16102..16551)
DNA (450bp) protein (150aa)
methyltransferase GidB; K03501 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Ribosomal RNA small subunit methyltransferase G id=2324957 bin=GWA2_Methylomirabilis_73_35 species=Desulfovibrio aespoeensis genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
methyltransferase
13_1_20cm_4_scaffold_57_22
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(16756..18444)
DNA (1689bp) protein (563aa)
oxaA; inner membrane protein OxaA; K03217 preprotein translocase subunit YidC Tax=GWA2_Rokubacteria_73_35_curated
Membrane protein insertase YidC id=2324956 bin=GWA2_Methylomirabilis_73_35 species=Desulfovibrio magneticus genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
hypothetical protein
13_1_20cm_4_scaffold_57_23
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(18447..18674)
DNA (228bp) protein (76aa)
hypothetical protein; K08998 hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative membrane protein insertion efficiency factor id=2324955 bin=GWA2_Methylomirabilis_73_35 species=mine drainage metagenome genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_20cm_4_scaffold_57_24
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(18671..18925)
DNA (255bp) protein (85aa)
Ribonuclease P protein component Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Ribonuclease P protein component id=2324954 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Micromonospora taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_57_25
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

19400..20719
DNA (1320bp) protein (440aa)
dnaA; chromosomal replication initiator protein dnaA Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
dnaA; chromosomal replication initiator protein dnaA id=14625297 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10 rbh
dnaA; chromosomal replication initiator protein dnaA
13_1_20cm_4_scaffold_57_26
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

20883..21977
DNA (1095bp) protein (365aa)
dnaN; DNA polymerase III subunit beta (EC:2.7.7.7) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
dnaN; DNA polymerase III subunit beta; K02338 DNA polymerase III subunit beta [EC:2.7.7.7] id=14625298 bin=bin7_NC10_sister species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
DNA polymerase III subunit beta
13_1_20cm_4_scaffold_57_27
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

22015..23088
DNA (1074bp) protein (358aa)
DNA replication and repair protein RecF; K03629 DNA replication and repair protein RecF Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
DNA replication and repair protein RecF id=3212580 bin=GWC2_Methylomirabilis_70_16 species=Thermobacillus composti genus=Thermobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
DNA replication and repair protein RecF
13_1_20cm_4_scaffold_57_28
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

23085..25463
DNA (2379bp) protein (793aa)
DNA gyrase B subunit (EC:5.99.1.3); K02470 DNA gyrase subunit B [EC:5.99.1.3] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
gyrB; DNA gyrase subunit B; K02470 DNA gyrase subunit B [EC:5.99.1.3] id=14625299 bin=bin7_NC10_sister species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10 rbh
DNA gyrase B subunit (EC:5.99.1.3)
13_1_20cm_4_scaffold_57_29
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


25479..27920
DNA (2442bp) protein (814aa)
gyrA; DNA gyrase subunit A (EC:5.99.1.3) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
gyrA; DNA gyrase subunit A (EC:5.99.1.3) id=14625300 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
gyrA; DNA gyrase subunit A (EC:5.99.1.3)
Displaying items 1-30 of 32 in total

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