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13_1_20cm_4_scaffold_650

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Displaying 26 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_650_1
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(3..668)
DNA (666bp) protein (222aa)
putative Vitamin B12 import system, ATP-binding protein BtuD (EC:3.6.3.-); K02013 iron complex transport system ATP-binding protein [EC:3.6.3.34] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Iron-enterobactin transporter ATP-binding protein id=2285115 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Poribacteria sp. WGA-A3 genus=unknown taxon_order=unknown taxon_class=unknown phylum=Poribacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
iron ABC transporter ATP-binding protein
13_1_20cm_4_scaffold_650_2
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(820..1839)
DNA (1020bp) protein (340aa)
btuC; vitamin B12 import system permease protein BtuC; K02015 iron complex transport system permease protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Vitamin B12 import system, permease protein BtuC id=4820070 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Fe3+-siderophore ABC transporter permease
13_1_20cm_4_scaffold_650_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(1836..2711)
DNA (876bp) protein (292aa)
periplasmic binding protein; K02016 iron complex transport system substrate-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Periplasmic binding protein id=2285114 bin=GWA2_Methylomirabilis_73_35 species=Desulfococcus oleovorans genus=Desulfococcus taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
periplasmic binding protein
13_1_20cm_4_scaffold_650_4
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(2708..4108)
DNA (1401bp) protein (467aa)
cobB; cobyrinic acid a,c-diamide synthase; K02224 cobyrinic acid a,c-diamide synthase [EC:6.3.5.9 6.3.5.11] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Cobyrinic acid A,C-diamide synthase n=1 Tax=Desulfovibrio sp. U5L RepID=I2Q6A3_9DELT
cobyrinic acid A,C-diamide synthase
13_1_20cm_4_scaffold_650_5
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(4108..5256)
DNA (1149bp) protein (383aa)
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC:2.4.2.21); K00768 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [EC:2.4.2.21] Tax=GWA2_Rokubacteria_
cobT; nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase (EC:2.4.2.21); K00768 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [EC:2.4.2.21] id=14627279 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Omnitrophica tax=bin7_NC10_sister organism_group=NC10 rbh
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC:2.4.2.21)
13_1_20cm_4_scaffold_650_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(5237..5809)
DNA (573bp) protein (191aa)
cobalbumin biosynthesis protein (EC:2.7.7.62); K02231 adenosylcobinamide kinase / adenosylcobinamide-phosphate guanylyltransferase [EC:2.7.1.156 2.7.7.62] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_cu
adenosylcobinamide kinase id=2285111 bin=GWA2_Methylomirabilis_73_35 species=Citromicrobium bathyomarinum genus=Citromicrobium taxon_order=Sphingomonadales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
adenosylcobinamide-phosphate guanylyltransferase
13_1_20cm_4_scaffold_650_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(6860..7318)
DNA (459bp) protein (153aa)
putative transcriptional regulator Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative sensor histidine kinase id=4194125 bin=GWC2_Methylomirabilis_70_24 species=Azospirillum lipoferum genus=Azospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Crp/Fnr family transcriptional regulator
13_1_20cm_4_scaffold_650_8
unknown

Not on your lists

comp(7318..7443)
DNA (126bp) protein (42aa)

This feature has no annotations

13_1_20cm_4_scaffold_650_9
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(7445..7792)
DNA (348bp) protein (116aa)
RNA-binding S4 domain-containing protein; K04762 ribosome-associated heat shock protein Hsp15 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hslR; Hsp15 family heat shock protein; K04762 ribosome-associated heat shock protein Hsp15 id=14627276 bin=bin7_NC10_sister species=Leucobacter sp. UCD-THU genus=Leucobacter taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin7_NC10_sister organism_group=NC10
heat shock protein Hsp15
13_1_20cm_4_scaffold_650_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

7846..8535
DNA (690bp) protein (230aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Uncharacterized protein id=1709660 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
hypothetical protein
13_1_20cm_4_scaffold_650_11
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

8532..9185
DNA (654bp) protein (218aa)
id=14627273 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
id=14627273 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10 rbh
hypothetical protein
13_1_20cm_4_scaffold_650_12
unknown

Not on your lists

9397..9651
DNA (255bp) protein (85aa)

This feature has no annotations

13_1_20cm_4_scaffold_650_13
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(9668..11284)
DNA (1617bp) protein (539aa)
gamma-glutamyltransferase; K00681 gamma-glutamyltranspeptidase [EC:2.3.2.2] Tax=GWA2_Rokubacteria_70_23_curated
Gamma-glutamyltransferase id=3249133 bin=GWC2_Methylomirabilis_70_24 species=Oceanibaculum indicum genus=Oceanibaculum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
gamma-glutamyltransferase
13_1_20cm_4_scaffold_650_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(11648..12220)
DNA (573bp) protein (191aa)
metal dependent phosphohydrolase; K15634 probable phosphoglycerate mutase [EC:5.4.2.1] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
phosphoglycerate mutase (EC:5.4.2.1)
Metal dependent phosphohydrolase id=1709630 bin=GWA2_Methylomirabilis_73_35 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_650_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(12199..12942)
DNA (744bp) protein (248aa)
cobalamin 5'-phosphate synthase; K02233 adenosylcobinamide-GDP ribazoletransferase [EC:2.7.8.26] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Cobalamin synthase id=1709629 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Chloroflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
cobalamin 5'-phosphate synthase
13_1_20cm_4_scaffold_650_16
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

13053..13682
DNA (630bp) protein (210aa)
hypothetical protein Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
hypothetical protein id=14626974 bin=bin7_NC10_sister species=Bradyrhizobium japonicum genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_20cm_4_scaffold_650_17
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

13691..14167
DNA (477bp) protein (159aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative uncharacterized protein id=4122811 bin=GWC2_Methylomirabilis_70_16 species=Leptonema illini genus=Leptonema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
13_1_20cm_4_scaffold_650_18
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

14164..15096
DNA (933bp) protein (311aa)
id=3441754 Tax=GWA2_Rokubacteria_70_23_curated
id=3441754 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
13_1_20cm_4_scaffold_650_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(15109..16635)
DNA (1527bp) protein (509aa)
propionyl-CoA carboxylase (EC:6.4.1.3)
propionyl-CoA carboxylase subunit beta Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative propionyl-CoA carboxylase beta subunit id=4243671 bin=GWF2_Methylomirabilis_70_14 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_650_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(16649..17671)
DNA (1023bp) protein (341aa)
rpoE1; RNA polymerase sigma-E factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
RNA polymerase sigma-E factor id=1709623 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
rpoE1; RNA polymerase sigma-E factor
13_1_20cm_4_scaffold_650_21
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(17723..18175)
DNA (453bp) protein (151aa)
3-dehydroquinate dehydratase (EC:4.2.1.10); K03786 3-dehydroquinate dehydratase II [EC:4.2.1.10] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
aroQ; 3-dehydroquinate dehydratase (EC:4.2.1.10)
3-dehydroquinate dehydratase id=1709621 bin=GWA2_Methylomirabilis_73_35 species=Desulfotomaculum hydrothermale genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_650_22
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(18252..18983)
DNA (732bp) protein (244aa)
Zinc/iron transporter Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Zinc/iron transporter id=14627800 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
Zinc/iron transporter
13_1_20cm_4_scaffold_650_23
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

19001..20695
DNA (1695bp) protein (565aa)
General secretion pathway protein E (Type II traffic warden ATPase) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
General secretion pathway protein E (Type II traffic warden ATPase) id=14627801 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10 rbh
General secretion pathway protein E (Type II traffic warden ATPase)
13_1_20cm_4_scaffold_650_24
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

20702..21913
DNA (1212bp) protein (404aa)
gspF; general secretory pathway component, cryptic Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
gspF; general secretory pathway component, cryptic id=14627802 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
gspF; general secretory pathway component, cryptic
13_1_20cm_4_scaffold_650_25
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

22126..22512
DNA (387bp) protein (129aa)
General secretion pathway protein G Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Pseudopilin, cryptic, general secretion pathway id=3269001 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
general secretion pathway protein G
13_1_20cm_4_scaffold_650_26
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

22488..22823
DNA (336bp) protein (112aa)
xpsH; general secretion pathway protein H; K02457 general secretion pathway protein H Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
General secretion pathway protein H id=3269002 bin=GWC2_Methylomirabilis_70_16 species=Verminephrobacter eiseniae genus=Verminephrobacter taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Displaying 26 items

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