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13_1_20cm_4_scaffold_752

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_752_1
R_Acidobacteria_68_18, Acidobacteria, Bacteria

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comp(1..816)
DNA (816bp) protein (272aa)
RNA-directed DNA polymerase (EC:2.7.7.49); K00986 RNA-directed DNA polymerase [EC:2.7.7.49] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
RNA-directed DNA polymerase (EC:2.7.7.49); K00986 RNA-directed DNA polymerase [EC:2.7.7.49] id=14624600 bin=bin5_DeltaP species=Mycobacterium vanbaalenii genus=Mycobacterium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin5_DeltaP organism_group=Deltaproteobacteria
Retron-type reverse transcriptase
13_1_20cm_4_scaffold_752_2
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

1312..1905
DNA (594bp) protein (198aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Hypothetical membrane protein id=3950581 bin=GWC2_Methylomirabilis_70_24 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
hypothetical protein
13_1_20cm_4_scaffold_752_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(2054..2956)
DNA (903bp) protein (301aa)
binding-protein-dependent transporters inner membrane component; K02034 peptide/nickel transport system permease protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ABC transporter permease; K02034 peptide/nickel transport system permease protein id=14627053 bin=bin7_NC10_sister species=Brevibacillus brevis genus=Brevibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10 rbh
binding-protein-dependent transporters inner membrane component
13_1_20cm_4_scaffold_752_4
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(3143..5383)
DNA (2241bp) protein (747aa)
ABC transporter permease; K02033 peptide/nickel transport system permease protein Tax=GWA2_Rokubacteria_73_35_curated
Dipeptide transport system permease DppB id=4526369 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
dppB; dipeptide transport system permease DppB
13_1_20cm_4_scaffold_752_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

5436..5906
DNA (471bp) protein (157aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Uncharacterized protein id=4526375 bin=GWA2_Methylomirabilis_73_35 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_20cm_4_scaffold_752_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

5903..7648
DNA (1746bp) protein (582aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Tetratricopeptide repeat family protein id=4526378 bin=GWA2_Methylomirabilis_73_35 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_20cm_4_scaffold_752_7
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

7665..8381
DNA (717bp) protein (239aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Uncharacterized protein id=4526381 bin=GWA2_Methylomirabilis_73_35 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_20cm_4_scaffold_752_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

8397..8837
DNA (441bp) protein (147aa)
ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC:2.7.1.148) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase id=4526385 bin=GWA2_Methylomirabilis_73_35 species=Kyrpidia tusciae genus=Kyrpidia taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
4-diphosphocytidyl-2C-methyl-D-erythritol kinase
13_1_20cm_4_scaffold_752_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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8783..9169
DNA (387bp) protein (129aa)
ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC:2.7.1.148) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC:2.7.1.148)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase id=3716360 bin=GWF2_Methylomirabilis_70_14 species=Kyrpidia tusciae genus=Kyrpidia taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_752_trna_1
unknown

Not on your lists

9184..9262
DNA (79bp)
transferRNA
13_1_20cm_4_scaffold_752_10
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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9278..10216
DNA (939bp) protein (313aa)
prs; ribose-phosphate pyrophosphokinase (Phosphoribosyl pyrophosphate synthetase) (P-Rib-PP synthetase) (PRPP synthetase) (EC:2.7.6.1) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
prs; ribose-phosphate pyrophosphokinase (Phosphoribosyl pyrophosphate synthetase) (P-Rib-PP synthetase) (PRPP synthetase) (EC:2.7.6.1)
Ribose-phosphate pyrophosphokinase id=4526388 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
13_1_20cm_4_scaffold_752_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


10239..10955
DNA (717bp) protein (239aa)
rplY; 50S ribosomal protein L25; K02897 large subunit ribosomal protein L25 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
50S ribosomal protein L25P; K02897 large subunit ribosomal protein L25 id=14627044 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5
13_1_20cm_4_scaffold_752_12
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

10971..11495
DNA (525bp) protein (175aa)
peptidyl-tRNA hydrolase (EC:3.1.1.29); K01056 peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29] Tax=GWA2_Rokubacteria_73_35_curated
peptidyl-tRNA hydrolase (EC:3.1.1.29)
Peptidyl-tRNA hydrolase id=4785576 bin=GWA2_Methylomirabilis_73_35 species=Thermaerobacter subterraneus genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_752_13
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(11515..12759)
DNA (1245bp) protein (415aa)
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
Transporter, UIT6 family id=4785574 bin=GWA2_Methylomirabilis_73_35 species=Leptonema illini genus=Leptonema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_20cm_4_scaffold_752_14
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

12890..13084
DNA (195bp) protein (65aa)
rpsU; 30S ribosomal protein S21 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
30S ribosomal protein S21 id=4785572 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Leptospirillum taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rpsU; 30S ribosomal protein S21
13_1_20cm_4_scaffold_752_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

13174..15615
DNA (2442bp) protein (814aa)
MutS2 family protein; K07456 DNA mismatch repair protein MutS2 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
MutS2 protein id=3357842 bin=GWC2_Methylomirabilis_70_16 species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10 rbh
MutS2 protein
13_1_20cm_4_scaffold_752_16
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

15618..17492
DNA (1875bp) protein (625aa)
DNA primase; K02316 DNA primase [EC:2.7.7.-] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
DNA primase id=4785564 bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
DNA primase
13_1_20cm_4_scaffold_752_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

17485..19044
DNA (1560bp) protein (520aa)
rpoD; RNA polymerase sigma factor RpoD (Sigma-70); K03086 RNA polymerase primary sigma factor Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
RNA polymerase sigma factor RpoD id=3357851 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
RNA polymerase sigma factor RpoD
Displaying 18 items

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