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13_1_20cm_4_scaffold_90

Search features with annotation key words

Displaying items 1-30 of 46 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_90_1
unknown

Not on your lists

comp(2..76)
DNA (75bp) protein (25aa)

This feature has no annotations

13_1_20cm_4_scaffold_90_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(70..1317)
DNA (1248bp) protein (416aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=14626658 bin=bin7_NC10_sister species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10 rbh
hypothetical protein
13_1_20cm_4_scaffold_90_3
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(1320..2495)
DNA (1176bp) protein (392aa)
cytosine deaminase-like metal-dependent hydrolase Tax=GWC2_Rokubacteria_70_16_curated
Cytosine deaminase-like metal-dependent hydrolase id=4814550 bin=GWC2_Methylomirabilis_70_16 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
amidohydrolase
13_1_20cm_4_scaffold_90_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(2492..3193)
DNA (702bp) protein (234aa)
Branched-chain amino acid ABC transporter,ATP-binding component (LivF-like) n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AER0_AZOBR
branched-chain amino acid ABC transporter,ATP-binding component (LivF-like) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ABC transporter
13_1_20cm_4_scaffold_90_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(3181..3939)
DNA (759bp) protein (253aa)
Branched-chain amino acid ABC transporter, ATP-binding component (LivG-like) n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7Z8N4_AZOL4
branched-chain amino acid ABC transporter, ATP-binding component (LivG-like); K01995 branched-chain amino acid transport system ATP-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
branched-chain amino acid ABC transporter, ATP-binding component (LivG-like)
13_1_20cm_4_scaffold_90_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(3932..5761)
DNA (1830bp) protein (610aa)
Branched-chain amino acid ABC-type transport system n=1 Tax=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) RepID=Q2W794_MAGSA rbh
branched chain amino acid ABC transporter; K01997 branched-chain amino acid transport system permease protein; K01998 branched-chain amino acid transport system permease protein Tax=RIFCSPLOWO2_02_FUL
branched chain amino acid ABC transporter
13_1_20cm_4_scaffold_90_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(5761..6975)
DNA (1215bp) protein (405aa)
ABC transporter substrate binding protein n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8I9I4_AZOC5
extracellular ligand-binding receptor; K01999 branched-chain amino acid transport system substrate-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ABC transporter substrate-binding protein
13_1_20cm_4_scaffold_90_8
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(7069..9522)
DNA (2454bp) protein (818aa)
multi-sensor signal transduction histidine kinase (EC:2.7.13.3) Tax=GWA2_Rokubacteria_73_35_curated
Putative PAS/PAC sensor protein id=4699808 bin=GWA2_Methylomirabilis_73_35 species=Actinosynnema mirum genus=Actinosynnema taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
PAS/PAC sensor protein
13_1_20cm_4_scaffold_90_9
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9707..10090
DNA (384bp) protein (128aa)
cupin 2 barrel domain-containing protein Tax=RBG_16_Betaproteobacteria_64_18_curated
Putative uncharacterized protein id=2193858 bin=GWB2_Deltaproteobacteria_65_81 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWB2_Deltaproteobacteria_65_81 organism_group=Deltaproteobacteria organism_desc=Good +
13_1_20cm_4_scaffold_90_10
Amorphus coralli, Amorphus, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10083..10424
DNA (342bp) protein (114aa)
hypothetical protein n=1 Tax=Amorphus coralli RepID=UPI000381661B
13_1_20cm_4_scaffold_90_11
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10428..11033
DNA (606bp) protein (202aa)
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI00031FBBB7
2,3-dihydroxyphenylpropionate 1,2-dioxygenase {ECO:0000313|EMBL:EPD43144.1}; TaxID=883100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Del
putative dioxygenase
13_1_20cm_4_scaffold_90_12
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

11155..12105
DNA (951bp) protein (317aa)
formamidase (EC:3.5.1.49) Tax=GWC2_Rokubacteria_70_16_curated
Formamidase (EC:3.5.1.49)
Formamidase id=4766431 bin=GWC2_Methylomirabilis_70_16 species=Bacillus selenitireducens genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10 rbh
13_1_20cm_4_scaffold_90_13
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

12102..12893
DNA (792bp) protein (264aa)
Lactoylglutathione lyase-like lyase n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DG31_SINAD
Lactoylglutathione lyase-like lyase {ECO:0000313|EMBL:AGA27626.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singul
lactoylglutathione lyase-like lyase
13_1_20cm_4_scaffold_90_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

12916..13752
DNA (837bp) protein (279aa)
oxidoreductase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative N5,N10-methylenetetrahydromethanopterin reductase-related protein id=4935480 bin=GWC2_Methylomirabilis_70_24 species=marine gamma proteobacterium HTCC2143 genus=unknown taxon_order=unknown taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good rbh
oxidoreductase
13_1_20cm_4_scaffold_90_15
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

13749..14186
DNA (438bp) protein (146aa)
ppox class F420-dependent protein Tax=GWA2_Rokubacteria_73_35_curated
Pyridoxamine 5'-phosphate oxidase-related, FMN-binding id=4348874 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
pyridoxamine 5'-phosphate oxidase-like FMN-binding protein
13_1_20cm_4_scaffold_90_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(14183..15733)
DNA (1551bp) protein (517aa)
Predicted protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Predicted protein id=4699805 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Micromonas taxon_order=Mamiellales taxon_class=Mamiellophyceae phylum=Chlorophyta tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_90_17
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

16095..17165
DNA (1071bp) protein (357aa)
GAF sensor-containing diguanylate cyclase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
GAF/GGDEF domain-containing protein id=4699804 bin=GWA2_Methylomirabilis_73_35 species=Cystobacter fuscus genus=Cystobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
GAF sensor-containing diguanylate cyclase
13_1_20cm_4_scaffold_90_18
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

17246..18253
DNA (1008bp) protein (336aa)
GAF/GGDEF domain-containing protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Diguanylate cyclase with GAF sensor id=4699803 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=TA06 tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
GAF sensor-containing diguanylate cyclase
13_1_20cm_4_scaffold_90_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

18262..19305
DNA (1044bp) protein (348aa)
GAF/GGDEF domain-containing protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Diguanylate cyclase with GAF sensor id=4699803 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=TA06 tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
GAF sensor-containing diguanylate cyclase
13_1_20cm_4_scaffold_90_20
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(19333..20373)
DNA (1041bp) protein (347aa)
gentisate 1,2-dioxygenase (EC:1.13.11.4); K00450 gentisate 1,2-dioxygenase [EC:1.13.11.4] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Gentisate 1,2-dioxygenase n=1 Tax=Cupriavidus basilensis OR16 RepID=H1S8P6_9BURK
gentisate 1,2-dioxygenase
13_1_20cm_4_scaffold_90_21
Thermincola potens, Thermincola, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20387..21115
DNA (729bp) protein (243aa)
Transcriptional regulator, GntR family n=1 Tax=Thermincola potens (strain JR) RepID=D5X921_THEPJ
Transcriptional regulator, GntR family {ECO:0000313|EMBL:ADG81021.1}; TaxID=635013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Thermincola.;" source="Thermincola potens (
GntR family transcriptional regulator
13_1_20cm_4_scaffold_90_22
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

21142..21825
DNA (684bp) protein (228aa)
aldehyde dehydrogenase n=1 Tax=Alicyclobacillus pohliae RepID=UPI000362186C
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
hypothetical protein
13_1_20cm_4_scaffold_90_23
Roseiflexus sp. RS-1, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

21872..22180
DNA (309bp) protein (103aa)
Assimilatory nitrite reductase (NAD(P)H) small subunit {ECO:0000313|EMBL:ABQ91575.1}; EC=1.7.1.4 {ECO:0000313|EMBL:ABQ91575.1};; TaxID=357808 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexal
Assimilatory nitrite reductase (NAD(P)H) small subunit n=1 Tax=Roseiflexus sp. (strain RS-1) RepID=A5UY72_ROSS1
Rieske (2Fe-2S) domain-containing protein
13_1_20cm_4_scaffold_90_24
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

22183..22608
DNA (426bp) protein (142aa)
hypothetical protein n=1 Tax=Pseudomonas pelagia RepID=UPI0003A31576
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
GlcG protein
13_1_20cm_4_scaffold_90_25
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

22724..22870
DNA (147bp) protein (49aa)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
13_1_20cm_4_scaffold_90_26
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

22867..24051
DNA (1185bp) protein (395aa)
coA-transferase III family protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
L-carnitine dehydratase/bile acid-inducible protein F id=3227645 bin=GWC2_Methylomirabilis_70_24 species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good rbh
coA-transferase III family protein
13_1_20cm_4_scaffold_90_27
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

24035..24931
DNA (897bp) protein (299aa)
id=3202777 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
id=3202777 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10 rbh
13_1_20cm_4_scaffold_90_28
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

24934..26049
DNA (1116bp) protein (372aa)
2-nitropropane dioxygenase; K00459 nitronate monooxygenase [EC:1.13.12.16] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
2-nitropropane dioxygenase NPD n=1 Tax=Paenibacillus sp. (strain JDR-2) RepID=C6D0Y5_PAESJ
2-nitropropane dioxygenase NPD
13_1_20cm_4_scaffold_90_29
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(26063..26524)
DNA (462bp) protein (154aa)
Transcriptional regulator, HxlR family n=3 Tax=Geobacillus RepID=E3IGU0_GEOS0
HxlR family transcriptional regulator Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
HxlR family transcriptional regulator
13_1_20cm_4_scaffold_90_30
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

26592..26987
DNA (396bp) protein (132aa)
hypothetical protein Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
hypothetical protein id=14627393 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Cyanobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
Displaying items 1-30 of 46 in total

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