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13_1_20cm_4_scaffold_1028

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_1028_1
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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comp(1..1140)
DNA (1140bp) protein (380aa)
Type II secretion system protein E n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D852_9BACT
Type II secretion system protein E {ECO:0000313|EMBL:EDY17406.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
type II secretion system protein E (GspE)
13_1_20cm_4_scaffold_1028_2
unknown

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comp(1160..1579)
DNA (420bp) protein (140aa)

This feature has no annotations

13_1_20cm_4_scaffold_1028_3
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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comp(1582..3750)
DNA (2169bp) protein (723aa)
Type II and III secretion system protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D845_9BACT
Type II and III secretion system protein {ECO:0000313|EMBL:EDY17399.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
gspD; general secretory pathway component, cryptic
13_1_20cm_4_scaffold_1028_4
unknown

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3990..4478
DNA (489bp) protein (163aa)

This feature has no annotations

13_1_20cm_4_scaffold_1028_5
Methanocella arvoryzae, Methanocella, Methanocellales, Methanomicrobia, Euryarchaeota, Archaea

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4517..5026
DNA (510bp) protein (170aa)
hypothetical protein n=1 Tax=Teredinibacter turnerae RepID=UPI000380E4EF
Uncharacterized protein {ECO:0000313|EMBL:CAJ36059.1}; TaxID=351160 species="Archaea; Euryarchaeota; Methanomicrobia; Methanocellales; Methanocellaceae; Methanocella.;" source="Methanocella arvoryzae
hypothetical protein
13_1_20cm_4_scaffold_1028_6
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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5026..5487
DNA (462bp) protein (154aa)
ansA; L-asparaginase (EC:3.5.1.1)
Peptidase T2 asparaginase 2 n=1 Tax=Rhodopirellula baltica SH28 RepID=K5C9U1_RHOBT
Ketosteroid isomerase-like enzyme {ECO:0000313|EMBL:CDM65737.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
13_1_20cm_4_scaffold_1028_7
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(5546..6886)
DNA (1341bp) protein (447aa)
UDP-N-acetylmuramate n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D5U0_9BACT
UDP-N-acetylmuramate {ECO:0000313|EMBL:EDY18143.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase
13_1_20cm_4_scaffold_1028_8
GWF2_Verrucomicrobia_62_7_curated, Verrucomicrobiae, Verrucomicrobia, Bacteria

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comp(7078..9171)
DNA (2094bp) protein (698aa)
adenylate/guanylate cyclase; K01768 adenylate cyclase [EC:4.6.1.1] Tax=GWF2_Verrucomicrobia_62_7_curated
adenylate cyclase n=1 Tax=Verrucomicrobium spinosum RepID=UPI00017463A4
adenylate/guanylate cyclase with Chase sensor
13_1_20cm_4_scaffold_1028_9
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists


9535..9921
DNA (387bp) protein (129aa)
50S ribosomal protein L20 n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D694_9BACT
50S ribosomal protein L20 {ECO:0000256|HAMAP-Rule:MF_00382, ECO:0000256|RuleBase:RU000560}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter fl
rplT; 50S ribosomal protein L20
13_1_20cm_4_scaffold_1028_10
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists


10000..11013
DNA (1014bp) protein (338aa)
Phenylalanine--tRNA ligase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00016813}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00089474};; Phenylalanyl-t
Phenylalanine--tRNA ligase alpha subunit n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D691_9BACT
phenylalanyl-tRNA synthetase subunit alpha
13_1_20cm_4_scaffold_1028_11
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

11123..12157
DNA (1035bp) protein (345aa)
phenylalanyl-tRNA synthetase subunit beta; K01890 phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
phenylalanyl-tRNA synthetase, beta subunit n=1 Tax=Verrucomicrobium spinosum RepID=UPI00017448F3
phenylalanyl-tRNA synthetase subunit beta
13_1_20cm_4_scaffold_1028_12
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

12121..13368
DNA (1248bp) protein (416aa)
Phenylalanine--tRNA ligase {ECO:0000256|SAAS:SAAS00022425}; EC=6.1.1.20 {ECO:0000256|SAAS:SAAS00022425};; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Cht
pheT; phenylalanyl-tRNA synthetase subunit beta (EC:6.1.1.20)
Phenylalanine--tRNA ligase beta subunit n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CVF2_9BACT
13_1_20cm_4_scaffold_1028_13
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

13726..14043
DNA (318bp) protein (106aa)
carbamoyl-phosphate synthase small subunit; K01956 carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
carbamoyl-phosphate synthase small subunit (EC:6.3.5.5)
carbamoyl phosphate synthase small subunit n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001745591
13_1_20cm_4_scaffold_1028_14
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

13995..14744
DNA (750bp) protein (250aa)
Carbamoyl-phosphate synthase small chain {ECO:0000256|HAMAP-Rule:MF_01209}; EC=6.3.5.5 {ECO:0000256|HAMAP-Rule:MF_01209};; Carbamoyl-phosphate synthetase glutamine chain {ECO:0000256|HAMAP-Rule:MF_012
carbamoyl-phosphate synthase small subunit (EC:6.3.5.5)
Carbamoyl-phosphate synthase small chain n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CVF9_9BACT
13_1_20cm_4_scaffold_1028_15
unknown

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14748..15041
DNA (294bp) protein (98aa)

This feature has no annotations

13_1_20cm_4_scaffold_1028_16
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(15065..15778)
DNA (714bp) protein (238aa)
Glycosyl transferase family protein n=1 Tax=uncultured Acidobacteria bacterium RepID=H5SFW0_9BACT
Glycosyl transferase {ECO:0000313|EMBL:CDM66917.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
cell wall biosynthesis glycosyltransferase
13_1_20cm_4_scaffold_1028_17
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(15912..16556)
DNA (645bp) protein (215aa)
Peptidase T2 asparaginase 2 n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PT33_CHIPD
Peptidase T2 asparaginase 2 {ECO:0000313|EMBL:ACU59072.1}; Flags: Precursor;; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" sou
peptidase T2 asparaginase 2
Displaying 17 items

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